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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0272900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Skp1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.22 (0.057) R2 : 0.589
β1 : -1.95 (0.214) R2dD : 0.0823 R2D : 0.16
β2 : 1.17 (0.136) R2dC : 0.0655 R2C : 0.0604
β3 : 3.39 (0.175) R2dE : 0.363 R2E : 0.422
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.375 (0.123) R2dN8 : 0.0122 R2N8 : 0.0106
σ : 1.06
deviance : 521.34
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_____
C
peak time of C : 1.44
E
wheather : humidity
threshold : 71.16
memory length : 1444
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.4
open length of G : 20.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
513.44 1.06 6.23 -2.23 1.18 3.29 -1.26 1.45 0.358 1.55 71.01 1444 17.4 20.6
516.11 1.06 6.22 -2.04 1.18 3.38 -1.15 -- 0.36 1.45 71.04 1444 17.4 20.3
519.31 1.06 6.24 -2.19 1.18 3.33 -- 1.44 0.358 1.38 71 1444 17.4 20.5
521.34 1.06 6.22 -1.95 1.17 3.39 -- -- 0.375 1.44 71.16 1444 17.4 20.2
572.67 1.11 6.24 -2.14 -- 3.79 -- 1.67 0.441 -- 71 1543 17.4 20.5
937.24 1.44 6.28 -2.98 1.17 -- -2.08 -- 0.0592 1.51 -- -- -- --
954.15 1.45 6.28 -2.9 1.17 -- -- -- 0.0724 1.22 -- -- -- --
566.99 1.11 6.22 -1.93 -- 3.89 -- -- 0.293 -- 72 1542 17.4 19.9
612.86 1.15 6.22 -- 1.3 3.72 -- -- 0.522 1.31 72 1440 17.5 19.3
1039.06 1.51 6.26 -2.86 -- -- -- -- 0.0962 -- -- -- -- --
1176.48 1.6 6.2 -- 1.12 -- -- -- 0.396 1.12 -- -- -- --
654.28 1.19 6.16 -- -- 4.27 -- -- 0.551 -- 71.81 1522 17.5 19.3
1254.69 1.65 6.19 -- -- -- -- -- 0.413 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 503.73 temperature 30 14400 > th dose independent rect. 15 1
2 504.77 temperature 30 14400 < th dose independent rect. 14 2
6 505.17 temperature 25 14400 > th dose dependent rect. 12 1
14 507.28 temperature 25 14400 > th dose dependent rect. 11 9
23 507.48 temperature 25 14400 > th dose dependent rect. 10 13
50 508.17 temperature 30 14400 < th dose independent rect. 14 7
51 508.17 temperature 30 14400 < th dose independent rect. 14 10
58 508.22 temperature 30 14400 < th dose independent rect. 14 13
61 508.23 temperature 30 14400 < th dose independent rect. 14 18
63 508.24 temperature 25 14400 > th dose dependent sin 21 NA
64 508.25 temperature 30 14400 < th dose independent rect. 14 16
223 509.64 temperature 25 14400 > th dose dependent rect. 17 23
236 509.76 temperature 25 14400 > th dose dependent rect. 22 22
276 510.01 temperature 25 14400 > th dose dependent no NA NA
290 510.15 temperature 25 14400 > th dose dependent rect. 15 1
381 511.05 temperature 30 14400 < th dose independent sin 16 NA
466 511.95 temperature 30 14400 > th dose independent sin 16 NA
551 513.09 temperature 30 14400 < th dose independent rect. 18 23
580 513.44 temperature 30 14400 < th dose independent rect. 5 12
582 513.45 temperature 30 14400 < th dose independent rect. 7 10
584 513.45 temperature 30 14400 < th dose independent rect. 2 15
590 513.48 temperature 30 14400 < th dose independent rect. 23 18
633 514.15 temperature 30 14400 > th dose independent rect. 18 23
645 514.46 temperature 30 14400 < th dose independent rect. 7 14
646 514.46 temperature 30 14400 < th dose independent rect. 5 16
648 514.46 temperature 30 14400 < th dose independent rect. 5 19
659 514.47 temperature 30 14400 < th dose independent rect. 2 19
661 514.47 temperature 30 14400 < th dose independent rect. 2 22
693 514.49 temperature 30 14400 < th dose independent rect. 22 23
694 514.50 temperature 30 14400 < th dose independent no NA NA
704 514.50 temperature 30 14400 < th dose independent rect. 7 23
814 515.43 temperature 30 14400 > th dose independent no NA NA
952 516.33 temperature 25 14400 > th dose dependent rect. 17 2