BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0159900 Os07g0159900|AK062586
(256 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0159900 Glutaredoxin domain containing protein 338 2e-93
Os03g0648800 Glutaredoxin domain containing protein 139 2e-33
Os04g0412800 Glutaredoxin domain containing protein 135 4e-32
Os03g0356400 Glutaredoxin domain containing protein 115 4e-26
Os07g0659900 Glutaredoxin domain containing protein 109 2e-24
Os02g0102000 Glutaredoxin domain containing protein 108 4e-24
Os02g0748800 Glutaredoxin domain containing protein 101 5e-22
Os05g0471100 Glutaredoxin domain containing protein 101 5e-22
Os04g0641300 Glutaredoxin domain containing protein 101 7e-22
Os05g0353600 Glutaredoxin domain containing protein 99 4e-21
Os01g0235900 Glutaredoxin domain containing protein 97 2e-20
Os01g0829400 Glutaredoxin domain containing protein 86 3e-17
Os06g0226100 Glutaredoxin domain containing protein 82 4e-16
Os03g0170800 78 8e-15
>Os07g0159900 Glutaredoxin domain containing protein
Length = 256
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 183/256 (71%), Positives = 183/256 (71%)
Query: 1 MIIKTLKARILCXXXXXXXXXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXHETPT 60
MIIKTLKARILC GR HETPT
Sbjct: 1 MIIKTLKARILCALKSSLPAAASPPPSPTKPGRAAAAVVVVAGDAFSDDASFFDAHETPT 60
Query: 61 KNGAEPIDDWELVDEEGRVGVXXXXXXXXXXQLREFPARCPPGGEGAVVLYTTTLRGIRK 120
KNGAEPIDDWELVDEEGRVGV QLREFPARCPPGGEGAVVLYTTTLRGIRK
Sbjct: 61 KNGAEPIDDWELVDEEGRVGVAAAAAEEEEEQLREFPARCPPGGEGAVVLYTTTLRGIRK 120
Query: 121 TFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGEKAVPPRLFVRGRDVGGAAQV 180
TFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGEKAVPPRLFVRGRDVGGAAQV
Sbjct: 121 TFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGEKAVPPRLFVRGRDVGGAAQV 180
Query: 181 LALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLRFVVCGECDGSRKVFDXXXXXXXX 240
LALHEDGRLLALLSPGSNKNRS KCDACGGLRFVVCGECDGSRKVFD
Sbjct: 181 LALHEDGRLLALLSPGSNKNRSAAAAAAKCDACGGLRFVVCGECDGSRKVFDGERGRGVR 240
Query: 241 XXXXXXXXLVMCALCL 256
LVMCALCL
Sbjct: 241 CRGCNENGLVMCALCL 256
>Os03g0648800 Glutaredoxin domain containing protein
Length = 324
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/143 (54%), Positives = 91/143 (63%), Gaps = 7/143 (4%)
Query: 93 LREFPARCPPGGEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRD 152
L F RCPPGGE AVVLYTT+LRG+RKTFEDC VR LLE L VAF ERDVSM RD
Sbjct: 160 LEGFETRCPPGGERAVVLYTTSLRGVRKTFEDCATVRRLLEGLRVAFLERDVSMHAPYRD 219
Query: 153 ELWSV---TGEKAVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXK 209
EL ++ + AVPPRLFV GR +GGA +V+ LHE RL +L +
Sbjct: 220 ELRALLVGLDDAAVPPRLFVDGRYLGGANEVVTLHEQARLRPVLRRAPRRG----AGDAA 275
Query: 210 CDACGGLRFVVCGECDGSRKVFD 232
C CGG FVVCG C GS +++D
Sbjct: 276 CAVCGGAWFVVCGACSGSHRLYD 298
>Os04g0412800 Glutaredoxin domain containing protein
Length = 448
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 92/133 (69%), Gaps = 8/133 (6%)
Query: 99 RCPPGGEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVT 158
+CPPGG AVVLYTTTLRGIR+TFE+CN VRA +E DV ERDVSMD G R+EL +
Sbjct: 296 KCPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYREELRLLL 355
Query: 159 GEKAVP-PRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLR 217
G + V P +FVRGR VGGAA+V L E+G+L ALL G + R C C G+R
Sbjct: 356 GGREVRVPAVFVRGRHVGGAAEVTKLEEEGKLKALLQ-GLPRARVW------CAGCAGVR 408
Query: 218 FVVCGECDGSRKV 230
FV+C +C+GSRKV
Sbjct: 409 FVMCRDCNGSRKV 421
>Os03g0356400 Glutaredoxin domain containing protein
Length = 203
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 82/134 (61%), Gaps = 8/134 (5%)
Query: 101 PPGGEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGE 160
P + AVVLYTT+LRG+R+TF DC VRA+L L VA ERDVSMD LR EL S+
Sbjct: 49 PQQQDHAVVLYTTSLRGVRRTFADCAAVRAVLRGLRVAVDERDVSMDASLRRELQSLLAA 108
Query: 161 KAVP---PRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLR 217
+ P P+L V R VGGA +V LHE G L LL + ++ + C CGG+R
Sbjct: 109 RGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFV-----CGGCGGVR 163
Query: 218 FVVCGECDGSRKVF 231
FV C CDGSRKVF
Sbjct: 164 FVPCPACDGSRKVF 177
>Os07g0659900 Glutaredoxin domain containing protein
Length = 211
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 78/127 (61%), Gaps = 8/127 (6%)
Query: 108 VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSV---TGEKAVP 164
VVLYTT+LRG+R+TF DC+ VRA+L VA ERDVSMD R EL S+ G
Sbjct: 64 VVLYTTSLRGVRRTFADCSSVRAILRGFRVAVDERDVSMDAAFRRELRSLLDARGRAFSL 123
Query: 165 PRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLRFVVCGEC 224
P+L V GR VGGA +V LHE G+L LL + ++ + CD CGG+RFV C C
Sbjct: 124 PQLLVGGRLVGGADEVKQLHESGQLRRLLDGAAGQDPAYV-----CDGCGGVRFVPCTAC 178
Query: 225 DGSRKVF 231
G RKVF
Sbjct: 179 GGGRKVF 185
>Os02g0102000 Glutaredoxin domain containing protein
Length = 294
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 108 VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDEL---WSVTGEKAVP 164
V+LYTTTLRG+R TFE CN VRA L + VAF+ERD+SMDRG R+EL S+ P
Sbjct: 129 VLLYTTTLRGVRATFEACNAVRAALHSHGVAFRERDISMDRGFREELRHRISLDHHDRAP 188
Query: 165 --PRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLRFVVCG 222
PRLFVRG VGGAA+V L E+G+L ALL G + R C +RF+ C
Sbjct: 189 LVPRLFVRGNHVGGAAEVARLEEEGKLAALLE-GLPRARPGGGCCDGCGG---MRFLPCF 244
Query: 223 ECDGSRKV 230
+C+GSRK+
Sbjct: 245 DCNGSRKL 252
>Os02g0748800 Glutaredoxin domain containing protein
Length = 369
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 108 VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGEKAVPPRL 167
VVLY T+LRGIRKT+EDC +++L+ V ERD+SM G ++EL + G P++
Sbjct: 219 VVLYLTSLRGIRKTYEDCWATKSILQGYGVLVDERDLSMHAGFKEELHAALGAPGSLPQV 278
Query: 168 FVRGRDVGGAAQVLALHEDGRLLALL-----SPGSNKNRSXXXXXXKCDACGGLRFVVCG 222
F GR +GGA +V +HE G L L +P + + C CGG+RFV C
Sbjct: 279 FADGRHLGGAEEVRRMHESGELSKALGDCEMAPPAAAGKGIALDA--CSGCGGVRFVPCE 336
Query: 223 ECDGSRKVFDXXXXXXXXXXXXXXXXLVMCALC 255
EC GS KVF LV C LC
Sbjct: 337 ECSGSCKVFLEELDTFRRCPDCNENGLVRCPLC 369
>Os05g0471100 Glutaredoxin domain containing protein
Length = 257
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 101 PPGGEGA-VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTG 159
P GGEGA VVLY T+LR +R T+EDC VRA+L L A ERD+SMD EL ++
Sbjct: 101 PGGGEGARVVLYYTSLRVVRGTYEDCRAVRAILRGLRAAVDERDLSMDPAFLPELAALLP 160
Query: 160 EK--AVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLR 217
+ P++FV GR +GGA +V LHE G L +++ + S C C G R
Sbjct: 161 HRRHVALPQVFVNGRHLGGAEEVRRLHESGELRRIVAAANPTPAS-------CGRCAGER 213
Query: 218 FVVCGECDGSRKVFD 232
+V+CG CDGS K +
Sbjct: 214 YVLCGSCDGSHKRYS 228
>Os04g0641300 Glutaredoxin domain containing protein
Length = 443
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 101 PPGGEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGE 160
PPGG+ V+Y T+LRG+RKTF DC VR++L + V ERDVSM R EL + G
Sbjct: 280 PPGGDKKAVVYFTSLRGVRKTFVDCCSVRSILRSYGVRLDERDVSMHAVFRAELAELLGP 339
Query: 161 K----AVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGL 216
A PR+FV GR +GGA V ALHE L +L C ACG +
Sbjct: 340 GGFACAALPRVFVDGRYLGGAEDVHALHEAAELARMLEGCEAAPVRKLGYMEACAACGDV 399
Query: 217 RFVVCGECDGSRKVF 231
RFV C C GS K+F
Sbjct: 400 RFVPCETCYGSCKIF 414
>Os05g0353600 Glutaredoxin domain containing protein
Length = 248
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 104 GEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVT-GEKA 162
GE VVLY T+LR +R TFEDC VRA+L L VA ERDVSMD EL ++ ++
Sbjct: 98 GERRVVLYFTSLRAVRGTFEDCRDVRAILRGLRVAVDERDVSMDAAYLAELRALMRRDRP 157
Query: 163 VPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLRFVVCG 222
P+LFV GR VG A +V LHE G L +++ + + C +CGG RFV CG
Sbjct: 158 ALPQLFVGGRLVGDADEVRLLHESGELHRVVAGAARAAAT------PCASCGGTRFVPCG 211
Query: 223 ECDGSRKVFDXXXXXXXXXXXXXXXXLVMCALC 255
CDGS + + LV CA C
Sbjct: 212 TCDGSHRRYSEKTGGFRVCTACNENGLVRCAAC 244
>Os01g0235900 Glutaredoxin domain containing protein
Length = 391
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 96 FPARCPPGGEGA-VVLYTTTLRGIRKTFEDCNGVRALLE----------NLDVAFQERDV 144
+P R PPG G VVLYTTTLRG+R+TFEDC R +E V ERDV
Sbjct: 215 YPERRPPGASGGGVVLYTTTLRGVRRTFEDCERARKAVEACAEAVSAAGGSPVVVDERDV 274
Query: 145 SMDRGLRDELWSVTGEKAVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXX 204
S+ EL + G PPRLFV GR +GGA L E G+L ++ + +
Sbjct: 275 SLHGEYLRELRGLAGAGDAPPRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACA 334
Query: 205 XXXXK-CDACGGLRFVVCGECDGSRKV 230
+ C+ CGG RFV C EC GS KV
Sbjct: 335 AKDGRGCEGCGGARFVPCWECGGSCKV 361
>Os01g0829400 Glutaredoxin domain containing protein
Length = 255
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 8/127 (6%)
Query: 108 VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVT--GEKAVPP 165
VVLY T+L +R T+EDC VRA+L L + ERD++MD EL ++ P
Sbjct: 106 VVLYFTSLHVVRSTYEDCRAVRAILRGLRASVDERDLAMDPRYLQELGALLPRARGVTLP 165
Query: 166 RLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDACGGLRFVVCGECD 225
++FV GR +GGA +V LHE G L +++ C CGG R+V+CG C+
Sbjct: 166 QVFVGGRHLGGAEEVRRLHESGELRRVVAGAGATA------FAACSRCGGERYVLCGSCN 219
Query: 226 GSRKVFD 232
GS K +
Sbjct: 220 GSHKRYS 226
>Os06g0226100 Glutaredoxin domain containing protein
Length = 383
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 71/146 (48%), Gaps = 22/146 (15%)
Query: 108 VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGEKAVP--- 164
VV+Y T+LRGIR+T+EDC ++L + V ERD+S+ G +DEL + G+ A
Sbjct: 211 VVVYLTSLRGIRQTYEDCCATASILRSYGVRVDERDLSLHAGYKDELRAALGDGAGGGGG 270
Query: 165 --------PRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNK-----------NRSXXX 205
P++FV G VGGA V +HE G L L + R
Sbjct: 271 VPGQGRPLPQVFVDGCHVGGAEDVRRMHESGELTGTLLKACDTAAAAVAAVGKGGRQLAP 330
Query: 206 XXXKCDACGGLRFVVCGECDGSRKVF 231
C CGG+RFV C C GS KVF
Sbjct: 331 PSEPCGGCGGVRFVPCDACSGSCKVF 356
>Os03g0170800
Length = 322
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 73/139 (52%), Gaps = 18/139 (12%)
Query: 108 VVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDEL------------- 154
VLY T+LRG+R T EDC RA+L V ERDVSM RG RDEL
Sbjct: 148 AVLYFTSLRGVRATHEDCCLARAILGGYGVRVDERDVSMHRGFRDELHGLLGLGRGAALA 207
Query: 155 --WSVTGEKAVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSXXXXXXKCDA 212
W+ A+ P LFV G VG A ++ LHE G L A L+ ++ + C+A
Sbjct: 208 KCWAPAAAPAL-PSLFVDGELVGNADELKRLHEAGELAARLA--GCESAAPGEAAGACEA 264
Query: 213 CGGLRFVVCGECDGSRKVF 231
C +RFV+CG C GS KV+
Sbjct: 265 CADVRFVLCGACSGSCKVY 283
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.142 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,942,904
Number of extensions: 254672
Number of successful extensions: 510
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 14
Length of query: 256
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 157
Effective length of database: 11,866,615
Effective search space: 1863058555
Effective search space used: 1863058555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)