Os04g0641300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin domain containing protein.
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Os04g0641300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.43 | 0.524 | 3.44 | -0.357 | 0.284 | -0.442 | -0.426 | 0.227 | -0.221 | 6.88 | 20.5 | 674 | -- | -- |
| 124.54 | 0.52 | 3.44 | -0.382 | 0.295 | -0.479 | -0.521 | -- | -0.207 | 6.71 | 20.5 | 852 | -- | -- |
| 124.77 | 0.52 | 3.44 | -0.351 | 0.282 | -0.42 | -- | 0.332 | -0.223 | 7.17 | 20.59 | 575 | -- | -- |
| 125.14 | 0.521 | 3.45 | -0.418 | 0.27 | -0.443 | -- | -- | -0.221 | 7.22 | 20.54 | 575 | -- | -- |
| 128.81 | 0.529 | 3.44 | -0.316 | -- | -0.483 | -- | 0.31 | -0.193 | -- | 20.5 | 575 | -- | -- |
| 130.92 | 0.536 | 3.47 | -0.566 | 0.336 | -- | -0.436 | -- | -0.332 | 7.36 | -- | -- | -- | -- |
| 131.43 | 0.537 | 3.47 | -0.575 | 0.335 | -- | -- | -- | -0.331 | 7.41 | -- | -- | -- | -- |
| 129 | 0.529 | 3.45 | -0.389 | -- | -0.519 | -- | -- | -0.213 | -- | 20.57 | 575 | -- | -- |
| 128.8 | 0.529 | 3.43 | -- | 0.29 | -0.595 | -- | -- | -0.144 | 6.59 | 20.5 | 859 | -- | -- |
| 137.42 | 0.548 | 3.47 | -0.57 | -- | -- | -- | -- | -0.326 | -- | -- | -- | -- | -- |
| 140.16 | 0.554 | 3.45 | -- | 0.33 | -- | -- | -- | -0.267 | 7.52 | -- | -- | -- | -- |
| 132.62 | 0.536 | 3.44 | -- | -- | -0.62 | -- | -- | -0.154 | -- | 20.6 | 580 | -- | -- |
| 145.99 | 0.564 | 3.46 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.72 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 121.29 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 7 | 122.06 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 9 | 122.44 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 11 | 122.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 14 | 122.80 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 21 | 122.94 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 22 | 122.95 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 33 | 123.13 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 35 | 123.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 37 | 123.28 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 38 | 123.28 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 51 | 123.38 | wind | 9 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 54 | 123.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 56 | 123.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 59 | 123.45 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 60 | 123.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 61 | 123.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 68 | 123.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 78 | 123.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 22 |
| 89 | 123.61 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 94 | 123.63 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 98 | 123.64 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 106 | 123.66 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 108 | 123.66 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 114 | 123.67 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 115 | 123.67 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 117 | 123.68 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 121 | 123.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 125 | 123.70 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 126 | 123.70 | wind | 9 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 128 | 123.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 130 | 123.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 136 | 123.73 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 163 | 123.77 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 177 | 123.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 187 | 123.81 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 207 | 123.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 237 | 123.90 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 251 | 123.94 | wind | 5 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 306 | 124.00 | wind | 7 | 43200 | < th | dose independent | sin | 15 | NA |
| 311 | 124.01 | wind | 7 | 43200 | > th | dose independent | sin | 14 | NA |
| 317 | 124.01 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 16 |
| 319 | 124.02 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 410 | 124.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 434 | 124.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 439 | 124.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 443 | 124.13 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 446 | 124.13 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 464 | 124.14 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 468 | 124.15 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 509 | 124.18 | wind | 5 | 43200 | > th | dose dependent | sin | 16 | NA |
| 520 | 124.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 521 | 124.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 557 | 124.23 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 593 | 124.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 643 | 124.29 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 661 | 124.30 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 670 | 124.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 8 |
| 702 | 124.33 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 720 | 124.34 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 781 | 124.37 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 787 | 124.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 804 | 124.39 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 839 | 124.41 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 895 | 124.44 | radiation | 1 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 907 | 124.44 | radiation | 1 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 925 | 124.45 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 961 | 124.47 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 962 | 124.47 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 17 |
| 981 | 124.47 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 984 | 124.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 985 | 124.48 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |