Os07g0159900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin domain containing protein.
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Os07g0159900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.03 | 0.294 | 10.3 | 0.0165 | 0.667 | -0.373 | -0.991 | -2.2 | -0.0815 | 21.1 | -2.306e-05 | 114 | -- | -- |
| 45.68 | 0.315 | 10.3 | -0.00125 | 0.693 | -0.216 | 0.0969 | -- | -0.0936 | 21.8 | -1.254 | 69 | -- | -- |
| 40.98 | 0.298 | 10.3 | 0.0272 | 0.743 | -0.306 | -- | -1.61 | -0.0989 | 21.3 | 10.88 | 152 | -- | -- |
| 45.71 | 0.315 | 10.3 | 0.0114 | 0.701 | -0.223 | -- | -- | -0.0899 | 21.6 | -0.8255 | 69 | -- | -- |
| 59.28 | 0.359 | 10.2 | 0.0464 | -- | -0.823 | -- | -1.18 | -0.0775 | -- | -36.32 | 35 | -- | -- |
| 46.15 | 0.318 | 10.3 | 0.0172 | 0.799 | -- | 0.223 | -- | -0.0995 | 22.1 | -- | -- | -- | -- |
| 46.33 | 0.319 | 10.3 | 0.00904 | 0.8 | -- | -- | -- | -0.0996 | 22 | -- | -- | -- | -- |
| 62.81 | 0.369 | 10.2 | 0.00861 | -- | -0.803 | -- | -- | -0.08 | -- | -63.94 | 34 | -- | -- |
| 45.71 | 0.315 | 10.3 | -- | 0.7 | -0.232 | -- | -- | -0.0915 | 21.6 | -0.8952 | 69 | -- | -- |
| 84.89 | 0.431 | 10.2 | 0.0192 | -- | -- | -- | -- | -0.0989 | -- | -- | -- | -- | -- |
| 46.34 | 0.318 | 10.3 | -- | 0.8 | -- | -- | -- | -0.101 | 22 | -- | -- | -- | -- |
| 62.82 | 0.369 | 10.2 | -- | -- | -0.803 | -- | -- | -0.0809 | -- | -17.98 | 34 | -- | -- |
| 84.9 | 0.43 | 10.2 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.48 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 5 | 39.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 6 | 39.22 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 7 | 39.24 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 10 | 39.29 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 1 |
| 11 | 39.30 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 21 | 39.30 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 23 | 39.31 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 107 | 39.50 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 14 |
| 123 | 39.54 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 124 | 39.55 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 125 | 39.56 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 133 | 39.64 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 153 | 39.74 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 158 | 39.74 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 168 | 39.79 | radiation | 40 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 174 | 39.83 | radiation | 40 | 90 | < th | dose dependent | no | NA | NA |
| 176 | 39.85 | temperature | 30 | 90 | < th | dose independent | sin | 1 | NA |
| 178 | 39.85 | radiation | 40 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 182 | 39.86 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 183 | 39.86 | radiation | 40 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 185 | 39.87 | radiation | 40 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 186 | 39.87 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 187 | 39.88 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 209 | 39.98 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 214 | 39.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 215 | 40.00 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 9 |
| 297 | 40.02 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 22 |
| 337 | 40.05 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 9 |
| 363 | 40.11 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 21 |
| 378 | 40.11 | radiation | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 390 | 40.15 | radiation | 20 | 270 | < th | dose independent | sin | 6 | NA |
| 453 | 40.20 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 480 | 40.24 | radiation | 30 | 720 | < th | dose independent | rect. | 19 | 17 |
| 500 | 40.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 502 | 40.26 | radiation | 1 | 30 | > th | dose independent | sin | 0 | NA |
| 513 | 40.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 564 | 40.33 | temperature | 30 | 10 | < th | dose independent | sin | 0 | NA |
| 619 | 40.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 652 | 40.43 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 699 | 40.47 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 739 | 40.49 | radiation | 10 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 831 | 40.53 | radiation | 10 | 30 | < th | dose dependent | rect. | 13 | 21 |
| 860 | 40.54 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 904 | 40.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 912 | 40.56 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 954 | 40.58 | radiation | 10 | 30 | < th | dose dependent | rect. | 7 | 23 |