Os03g0356400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glutaredoxin domain containing protein.
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Os03g0356400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glutaredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.24 | 0.326 | 9.55 | 0.768 | 0.659 | -1.31 | -0.184 | -0.0332 | 0.319 | 4.86 | 25.03 | 900 | -- | -- |
| 48.25 | 0.324 | 9.55 | 0.765 | 0.658 | -1.31 | -0.178 | -- | 0.318 | 4.86 | 25.04 | 903 | -- | -- |
| 48.31 | 0.324 | 9.55 | 0.761 | 0.644 | -1.31 | -- | -0.00733 | 0.317 | 4.74 | 25 | 951 | -- | -- |
| 48.31 | 0.324 | 9.55 | 0.759 | 0.642 | -1.31 | -- | -- | 0.319 | 4.74 | 24.94 | 956 | -- | -- |
| 68.19 | 0.385 | 9.58 | 0.697 | -- | -1.47 | -- | 0.109 | 0.281 | -- | 26.15 | 1133 | -- | -- |
| 73.12 | 0.401 | 9.49 | 1.14 | 0.707 | -- | -0.123 | -- | 0.592 | 3.88 | -- | -- | -- | -- |
| 73.16 | 0.401 | 9.49 | 1.14 | 0.706 | -- | -- | -- | 0.593 | 3.86 | -- | -- | -- | -- |
| 68.2 | 0.385 | 9.57 | 0.729 | -- | -1.47 | -- | -- | 0.282 | -- | 26.1 | 1139 | -- | -- |
| 57.44 | 0.353 | 9.58 | -- | 0.68 | -1.62 | -- | -- | 0.192 | 4.01 | 23.37 | 7998 | -- | -- |
| 100.54 | 0.469 | 9.5 | 1.17 | -- | -- | -- | -- | 0.612 | -- | -- | -- | -- | -- |
| 107.38 | 0.485 | 9.52 | -- | 0.728 | -- | -- | -- | 0.466 | 3.84 | -- | -- | -- | -- |
| 80.42 | 0.418 | 9.62 | -- | -- | -1.8 | -- | -- | 0.153 | -- | 26.08 | 1161 | -- | -- |
| 136.56 | 0.545 | 9.53 | -- | -- | -- | -- | -- | 0.482 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 48.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 15 |
| 7 | 48.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 24 | 48.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 62 | 48.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 78 | 48.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 107 | 48.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 157 | 48.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 163 | 48.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 166 | 48.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 210 | 48.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 214 | 48.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 221 | 48.87 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 227 | 48.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 264 | 48.93 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 287 | 48.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 309 | 48.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 342 | 49.04 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 361 | 49.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 374 | 49.07 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 646 | 49.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 747 | 49.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 748 | 49.51 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 840 | 49.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 865 | 49.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 928 | 49.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |