BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0356400 Os03g0356400|009-148-D02
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0356400 Glutaredoxin domain containing protein 345 1e-95
Os07g0659900 Glutaredoxin domain containing protein 223 5e-59
Os02g0748800 Glutaredoxin domain containing protein 127 5e-30
Os04g0641300 Glutaredoxin domain containing protein 121 3e-28
Os05g0353600 Glutaredoxin domain containing protein 119 1e-27
Os05g0471100 Glutaredoxin domain containing protein 117 5e-27
Os04g0412800 Glutaredoxin domain containing protein 112 2e-25
Os01g0829400 Glutaredoxin domain containing protein 108 2e-24
Os07g0159900 Glutaredoxin domain containing protein 108 2e-24
Os06g0226100 Glutaredoxin domain containing protein 101 4e-22
Os03g0170800 96 1e-20
Os03g0648800 Glutaredoxin domain containing protein 95 3e-20
Os02g0102000 Glutaredoxin domain containing protein 90 9e-19
Os01g0235900 Glutaredoxin domain containing protein 90 1e-18
>Os03g0356400 Glutaredoxin domain containing protein
Length = 203
Score = 345 bits (885), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 176/203 (86%), Positives = 176/203 (86%)
Query: 1 MDEFGGGSVGPFSKKPRHLSRSLTYXXXXXPYQGQGRSPSFNARRQHHPQQQDHAVVLYT 60
MDEFGGGSVGPFSKKPRHLSRSLTY PYQGQGRSPSFNARRQHHPQQQDHAVVLYT
Sbjct: 1 MDEFGGGSVGPFSKKPRHLSRSLTYHHHHHPYQGQGRSPSFNARRQHHPQQQDHAVVLYT 60
Query: 61 TSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAARGRPFSLPQLLV 120
TSLRGVRRTFADC DERDVSMDASLRRELQSLLAARGRPFSLPQLLV
Sbjct: 61 TSLRGVRRTFADCAAVRAVLRGLRVAVDERDVSMDASLRRELQSLLAARGRPFSLPQLLV 120
Query: 121 GARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFXXXXXXXXRFVPCPACDGSRKVFVQE 180
GARLVGGADEVRQLHEAGELRRLLEGAAGQDPAF RFVPCPACDGSRKVFVQE
Sbjct: 121 GARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFVCGGCGGVRFVPCPACDGSRKVFVQE 180
Query: 181 EGCARRCGDCNENGLVRCPNCCS 203
EGCARRCGDCNENGLVRCPNCCS
Sbjct: 181 EGCARRCGDCNENGLVRCPNCCS 203
>Os07g0659900 Glutaredoxin domain containing protein
Length = 211
Score = 223 bits (569), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 122/195 (62%), Positives = 137/195 (70%), Gaps = 8/195 (4%)
Query: 13 SKKPRHLSRSLTYXXXXXPYQGQGRSPSFNARRQHH----PQQQDHAVVLYTTSLRGVRR 68
+KKP H +RSLTY +QG P R+H P+ + VVLYTTSLRGVRR
Sbjct: 21 AKKPFHFARSLTYHH----HQGHRVLPPAAKWRRHQLADEPRARPKDVVLYTTSLRGVRR 76
Query: 69 TFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAARGRPFSLPQLLVGARLVGGA 128
TFADC DERDVSMDA+ RREL+SLL ARGR FSLPQLLVG RLVGGA
Sbjct: 77 TFADCSSVRAILRGFRVAVDERDVSMDAAFRRELRSLLDARGRAFSLPQLLVGGRLVGGA 136
Query: 129 DEVRQLHEAGELRRLLEGAAGQDPAFXXXXXXXXRFVPCPACDGSRKVFVQEEGCARRCG 188
DEV+QLHE+G+LRRLL+GAAGQDPA+ RFVPC AC G RKVFV+EE +RCG
Sbjct: 137 DEVKQLHESGQLRRLLDGAAGQDPAYVCDGCGGVRFVPCTACGGGRKVFVEEEDRVQRCG 196
Query: 189 DCNENGLVRCPNCCS 203
DCNENGLVRCPNCCS
Sbjct: 197 DCNENGLVRCPNCCS 211
>Os02g0748800 Glutaredoxin domain containing protein
Length = 369
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 90/157 (57%), Gaps = 11/157 (7%)
Query: 53 DHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAARGRP 112
D VVLY TSLRG+R+T+ DC DERD+SM A + EL AA G P
Sbjct: 216 DRKVVLYLTSLRGIRKTYEDCWATKSILQGYGVLVDERDLSMHAGFKEELH---AALGAP 272
Query: 113 FSLPQLLVGARLVGGADEVRQLHEAGELRRLL-------EGAAGQDPAFXXXXX-XXXRF 164
SLPQ+ R +GGA+EVR++HE+GEL + L AAG+ A RF
Sbjct: 273 GSLPQVFADGRHLGGAEEVRRMHESGELSKALGDCEMAPPAAAGKGIALDACSGCGGVRF 332
Query: 165 VPCPACDGSRKVFVQEEGCARRCGDCNENGLVRCPNC 201
VPC C GS KVF++E RRC DCNENGLVRCP C
Sbjct: 333 VPCEECSGSCKVFLEELDTFRRCPDCNENGLVRCPLC 369
>Os04g0641300 Glutaredoxin domain containing protein
Length = 443
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 42 NARRQH-HPQQQDHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRR 100
+A+ H P D V+Y TSLRGVR+TF DC DERDVSM A R
Sbjct: 272 DAKVAHLRPPGGDKKAVVYFTSLRGVRKTFVDCCSVRSILRSYGVRLDERDVSMHAVFRA 331
Query: 101 ELQSLLAARGRP-FSLPQLLVGARLVGGADEVRQLHEAGELRRLLEG---AAGQDPAFXX 156
EL LL G +LP++ V R +GGA++V LHEA EL R+LEG A + +
Sbjct: 332 ELAELLGPGGFACAALPRVFVDGRYLGGAEDVHALHEAAELARMLEGCEAAPVRKLGYME 391
Query: 157 XXXX--XXRFVPCPACDGSRKVFVQEE---GCARRCGDCNENGLVRCPNCC 202
RFVPC C GS K+FV ++ G RRC DCNENGL+RCP CC
Sbjct: 392 ACAACGDVRFVPCETCYGSCKIFVDDDVDAGEFRRCPDCNENGLIRCPVCC 442
>Os05g0353600 Glutaredoxin domain containing protein
Length = 248
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 56 VVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAARGRPFSL 115
VVLY TSLR VR TF DC DERDVSMDA+ EL++L+ R RP +L
Sbjct: 102 VVLYFTSLRAVRGTFEDCRDVRAILRGLRVAVDERDVSMDAAYLAELRALMR-RDRP-AL 159
Query: 116 PQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFXXXXXXXXRFVPCPACDGSRK 175
PQL VG RLVG ADEVR LHE+GEL R++ GAA RFVPC CDGS +
Sbjct: 160 PQLFVGGRLVGDADEVRLLHESGELHRVVAGAARAAAT-PCASCGGTRFVPCGTCDGSHR 218
Query: 176 VFVQEEGCARRCGDCNENGLVRCPNCCS 203
+ ++ G R C CNENGLVRC CCS
Sbjct: 219 RYSEKTGGFRVCTACNENGLVRCAACCS 246
>Os05g0471100 Glutaredoxin domain containing protein
Length = 257
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 56 VVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAARGRPFSL 115
VVLY TSLR VR T+ DC DERD+SMD + EL +LL R R +L
Sbjct: 109 VVLYYTSLRVVRGTYEDCRAVRAILRGLRAAVDERDLSMDPAFLPELAALLPHR-RHVAL 167
Query: 116 PQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFXXXXXXXXRFVPCPACDGSRK 175
PQ+ V R +GGA+EVR+LHE+GELRR++ AA PA R+V C +CDGS K
Sbjct: 168 PQVFVNGRHLGGAEEVRRLHESGELRRIV-AAANPTPA-SCGRCAGERYVLCGSCDGSHK 225
Query: 176 VFVQEEGCA-RRCGDCNENGLVRCPNCC 202
+ + G R C CNENGLVRCP+CC
Sbjct: 226 RYSHKVGGGFRACAMCNENGLVRCPDCC 253
>Os04g0412800 Glutaredoxin domain containing protein
Length = 448
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Query: 31 PYQGQGRSPSFNARRQHHPQQQDHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDER 90
P + P+ A + P D AVVLYTT+LRG+RRTF +C ER
Sbjct: 281 PKHPKAAPPAMVAEGKCPPGGAD-AVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIER 339
Query: 91 DVSMDASLRRELQSLLAARGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQ 150
DVSMD+ R EL+ LL GR +P + V R VGGA EV +L E G+L+ LL+G
Sbjct: 340 DVSMDSGYREELRLLLG--GREVRVPAVFVRGRHVGGAAEVTKLEEEGKLKALLQGLPRA 397
Query: 151 DPAFXXXXXXXXRFVPCPACDGSRKVFVQ-EEGCARRCGDCNENGLVRCPNC 201
RFV C C+GSRKV V E +CG+CNENGLVRCP C
Sbjct: 398 R--VWCAGCAGVRFVMCRDCNGSRKVRVDGERKETVQCGECNENGLVRCPIC 447
>Os01g0829400 Glutaredoxin domain containing protein
Length = 255
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Query: 51 QQDHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAARG 110
+ D VVLY TSL VR T+ DC DERD++MD +EL +LL R
Sbjct: 101 EADRRVVLYFTSLHVVRSTYEDCRAVRAILRGLRASVDERDLAMDPRYLQELGALLP-RA 159
Query: 111 RPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFXXXXXXXXRFVPCPAC 170
R +LPQ+ VG R +GGA+EVR+LHE+GELRR++ GA R+V C +C
Sbjct: 160 RGVTLPQVFVGGRHLGGAEEVRRLHESGELRRVVAGAGATA-FAACSRCGGERYVLCGSC 218
Query: 171 DGSRKVF-VQEEGCARRCGDCNENGLVRCPNC 201
+GS K + ++ G R C CNENGLVRCP+C
Sbjct: 219 NGSHKRYSLKGGGGFRTCAGCNENGLVRCPDC 250
>Os07g0159900 Glutaredoxin domain containing protein
Length = 256
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 49 PQQQDHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAA 108
P + AVVLYTT+LRG+R+TF DC ERDVSMD LR EL S+
Sbjct: 101 PPGGEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGLRDELWSVTGE 160
Query: 109 RGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFXXXXXX-----XXR 163
+ P P+L V R VGGA +V LHE G L LL + ++ + R
Sbjct: 161 KAVP---PRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSAAAAAAKCDACGGLR 217
Query: 164 FVPCPACDGSRKVFVQEEGCARRCGDCNENGLVRCPNC 201
FV C CDGSRKVF E G RC CNENGLV C C
Sbjct: 218 FVVCGECDGSRKVFDGERGRGVRCRGCNENGLVMCALC 255
>Os06g0226100 Glutaredoxin domain containing protein
Length = 383
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 92/175 (52%), Gaps = 31/175 (17%)
Query: 56 VVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLL--------- 106
VV+Y TSLRG+R+T+ DC DERD+S+ A + EL++ L
Sbjct: 211 VVVYLTSLRGIRQTYEDCCATASILRSYGVRVDERDLSLHAGYKDELRAALGDGAGGGGG 270
Query: 107 -AARGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLL-------------EGAAGQD- 151
+GRP LPQ+ V VGGA++VR++HE+GEL L G G+
Sbjct: 271 VPGQGRP--LPQVFVDGCHVGGAEDVRRMHESGELTGTLLKACDTAAAAVAAVGKGGRQL 328
Query: 152 --PAFXXXXXXXXRFVPCPACDGSRKVFVQEE---GCARRCGDCNENGLVRCPNC 201
P+ RFVPC AC GS KVFV ++ G RRC +CNENGLVRCP C
Sbjct: 329 APPSEPCGGCGGVRFVPCDACSGSCKVFVDDDEDGGAFRRCPECNENGLVRCPVC 383
>Os03g0170800
Length = 322
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 84/186 (45%), Gaps = 27/186 (14%)
Query: 44 RRQHHPQQQDHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQ 103
+++ P + VLY TSLRGVR T DC DERDVSM R EL
Sbjct: 136 KKKASPVARPRKAVLYFTSLRGVRATHEDCCLARAILGGYGVRVDERDVSMHRGFRDELH 195
Query: 104 SLLA-----------ARGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDP 152
LL A +LP L V LVG ADE+++LHEAGEL L G P
Sbjct: 196 GLLGLGRGAALAKCWAPAAAPALPSLFVDGELVGNADELKRLHEAGELAARLAGCESAAP 255
Query: 153 AFXXXXXXX---XRFVPCPACDGSRKVFVQEEGCA-------------RRCGDCNENGLV 196
RFV C AC GS KV+V + RRC +CNENG+V
Sbjct: 256 GEAAGACEACADVRFVLCGACSGSCKVYVDDGDDDDENPLDGGGGGGFRRCTECNENGIV 315
Query: 197 RCPNCC 202
RCP CC
Sbjct: 316 RCPVCC 321
>Os03g0648800 Glutaredoxin domain containing protein
Length = 324
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Query: 49 PQQQDHAVVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAA 108
P + AVVLYTTSLRGVR+TF DC ERDVSM A R EL++LL
Sbjct: 168 PPGGERAVVLYTTSLRGVRKTFEDCATVRRLLEGLRVAFLERDVSMHAPYRDELRALLVG 227
Query: 109 RGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGA---AGQDPAFXXXXXXXXRFV 165
P+L V R +GGA+EV LHE LR +L A D A FV
Sbjct: 228 LDDAAVPPRLFVDGRYLGGANEVVTLHEQARLRPVLRRAPRRGAGDAACAVCGGAW--FV 285
Query: 166 PCPACDGSRKVFVQEEGCARR--CGDCNENGLVRCPNC 201
C AC GS +++ R C CNENGLV CP C
Sbjct: 286 VCGACSGSHRLYDAAAAAGGRVPCTGCNENGLVPCPLC 323
>Os02g0102000 Glutaredoxin domain containing protein
Length = 294
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 56 VVLYTTSLRGVRRTFADCXXXXXXXXXXXXXXDERDVSMDASLRRELQSLLAA--RGRPF 113
V+LYTT+LRGVR TF C ERD+SMD R EL+ ++ R
Sbjct: 129 VLLYTTTLRGVRATFEACNAVRAALHSHGVAFRERDISMDRGFREELRHRISLDHHDRAP 188
Query: 114 SLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDP-AFXXXXXXXXRFVPCPACDG 172
+P+L V VGGA EV +L E G+L LLEG P RF+PC C+G
Sbjct: 189 LVPRLFVRGNHVGGAAEVARLEEEGKLAALLEGLPRARPGGGCCDGCGGMRFLPCFDCNG 248
Query: 173 SRKVFVQ----------------EEGCARRCGDCNENGLVRCPNC 201
SRK+ RCG+CNENGLV CP C
Sbjct: 249 SRKLCFSLPTPVPAAAAARSNKTRAVVVVRCGECNENGLVLCPIC 293
>Os01g0235900 Glutaredoxin domain containing protein
Length = 391
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 49 PQQQDHAVVLYTTSLRGVRRTFAD----------CXXXXXXXXXXXXXXDERDVSMDASL 98
P VVLYTT+LRGVRRTF D C DERDVS+
Sbjct: 221 PGASGGGVVLYTTTLRGVRRTFEDCERARKAVEACAEAVSAAGGSPVVVDERDVSLHGEY 280
Query: 99 RRELQSLLAARGRPFSLPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFXXXX 158
REL+ L A P P+L V R +GGAD +L E+G+LR ++ A + A
Sbjct: 281 LRELRGLAGAGDAP---PRLFVMGRYLGGADACAELAESGKLREMMRWARARGEACAAKD 337
Query: 159 X------XXXRFVPCPACDGSRKVFVQEEGC----ARRCGDCNENGLVRCPNC 201
RFVPC C GS KV RC CNENGL+ CP C
Sbjct: 338 GRGCEGCGGARFVPCWECGGSCKVVAAGATAAAADVERCAKCNENGLMLCPIC 390
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,777,591
Number of extensions: 257333
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 15
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)