BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510800 Os05g0510800|AF435642
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0510800 Conserved hypothetical protein 394 e-110
Os03g0770800 CSLC9 343 8e-95
Os07g0124750 329 1e-90
Os09g0428000 Glycosyl transferase, family 2 domain containi... 297 4e-81
Os08g0253800 Glycosyl transferase, family 2 domain containi... 277 5e-75
Os01g0766900 Conserved hypothetical protein 266 1e-71
Os02g0192500 Similar to Cellulose synthase-like protein (Fr... 123 1e-28
Os10g0406400 Conserved hypothetical protein 109 2e-24
Os03g0377700 Cellulose synthase-like A5 102 3e-22
Os07g0630900 Conserved hypothetical protein 100 1e-21
Os06g0625700 Conserved hypothetical protein 80 2e-15
Os03g0169500 Similar to Cellulose synthase-like A4 75 5e-14
>Os05g0510800 Conserved hypothetical protein
Length = 252
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/252 (78%), Positives = 199/252 (78%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGXXXXXXXXXXXXX 60
VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIG
Sbjct: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGFWKKFNLIFLFFL 60
Query: 61 XXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL 120
YSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL
Sbjct: 61 LRKLILPFYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL 120
Query: 121 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQRVGSAPNL 180
LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQRVGSAPNL
Sbjct: 121 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQRVGSAPNL 180
Query: 181 DALTXXXXXXXXXXXXXXHNRIYRKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFL 240
DALT HNRIYRKE QGIHFYFLLFQGVSFL
Sbjct: 181 DALTKEESNPKKDSKKKKHNRIYRKELALSFLLLTAAARSLLSAQGIHFYFLLFQGVSFL 240
Query: 241 VVGLDLIGEQVE 252
VVGLDLIGEQVE
Sbjct: 241 VVGLDLIGEQVE 252
>Os03g0770800 CSLC9
Length = 596
Score = 343 bits (880), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 171/252 (67%), Positives = 184/252 (73%), Gaps = 1/252 (0%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGXXXXXXXXXXXXX 60
+FLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLC DIIK KI
Sbjct: 346 IFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIKCKIVFWKKANLIFLFFL 405
Query: 61 XXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL 120
YSFTLFC+ILPMTMFVPEAELP WVVCYIPA MS+LNILP+PKSFPFI+PYL
Sbjct: 406 LRKLILPFYSFTLFCIILPMTMFVPEAELPDWVVCYIPALMSLLNILPSPKSFPFIIPYL 465
Query: 121 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQRVGSAPNL 180
LFENTMSVTKFNAMISGLFQLG+AYEWVVTKKSGRSSEGDL+ L K K Q+ SAPNL
Sbjct: 466 LFENTMSVTKFNAMISGLFQLGNAYEWVVTKKSGRSSEGDLISLAPKELKHQKTESAPNL 525
Query: 181 DALTXXXXXXXXXXXXXXHNRIYRKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFL 240
DA+ HNRIY+KE QGIHFYFLLFQG+SFL
Sbjct: 526 DAIA-KEQSAPRKDVKKKHNRIYKKELALSLLLLTAAARSLLSKQGIHFYFLLFQGISFL 584
Query: 241 VVGLDLIGEQVE 252
+VGLDLIGEQ+E
Sbjct: 585 LVGLDLIGEQIE 596
>Os07g0124750
Length = 686
Score = 329 bits (843), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/252 (64%), Positives = 178/252 (70%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGXXXXXXXXXXXXX 60
VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLC DII+ KI
Sbjct: 435 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRCKIAFWKKANLIFLFFL 494
Query: 61 XXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL 120
YSFTLFC+ILPMTMF+PEAELP WVVCYIPA MS LNILPAPKSFPFI+PYL
Sbjct: 495 LRKLILPFYSFTLFCIILPMTMFIPEAELPDWVVCYIPALMSFLNILPAPKSFPFIIPYL 554
Query: 121 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQRVGSAPNL 180
LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDL+ L K KQQ++ +
Sbjct: 555 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLIALAPKELKQQKILDLTAI 614
Query: 181 DALTXXXXXXXXXXXXXXHNRIYRKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFL 240
+ +NRIY+KE QGIHFYFL+FQG+SFL
Sbjct: 615 KEQSMLKQSSPRNEAKKKYNRIYKKELALSLLLLTAAARSLLSKQGIHFYFLMFQGLSFL 674
Query: 241 VVGLDLIGEQVE 252
+VGLDLIGE V+
Sbjct: 675 LVGLDLIGEDVK 686
>Os09g0428000 Glycosyl transferase, family 2 domain containing protein
Length = 485
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/259 (56%), Positives = 173/259 (66%), Gaps = 7/259 (2%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGXXXXXXXXXXXXX 60
+FLNDV+ CELPESYEAYRKQQHRWHSGPM LFRLC DI+ +KI
Sbjct: 227 IFLNDVKVLCELPESYEAYRKQQHRWHSGPMHLFRLCLPDILTAKISSWKKANLILLFFL 286
Query: 61 XXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL 120
YSFTLFCVILP+TMFVPEAELP WV+CY+P MS LNILP+P+SFPFIVPYL
Sbjct: 287 LRKLILPFYSFTLFCVILPLTMFVPEAELPVWVICYVPVCMSFLNILPSPRSFPFIVPYL 346
Query: 121 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSK-------QQR 173
LFENTMSVTKFNAM+SGLF+LGS+YEW+VTKKSGRSSE DL E+ +K Q++
Sbjct: 347 LFENTMSVTKFNAMVSGLFKLGSSYEWIVTKKSGRSSESDLSTAAERDTKDLTLPRLQKQ 406
Query: 174 VGSAPNLDALTXXXXXXXXXXXXXXHNRIYRKEXXXXXXXXXXXXXXXXXXQGIHFYFLL 233
+ + ++ N++Y+KE QGIHFYFLL
Sbjct: 407 ISESELIELKMQKERQEKAPLGAKKANKVYKKELALSLLLLTAATRSLLSAQGIHFYFLL 466
Query: 234 FQGVSFLVVGLDLIGEQVE 252
FQGVSFL VGLDLIGEQ++
Sbjct: 467 FQGVSFLFVGLDLIGEQID 485
>Os08g0253800 Glycosyl transferase, family 2 domain containing protein
Length = 482
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/279 (53%), Positives = 170/279 (60%), Gaps = 30/279 (10%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSKIGXXXXXXXXXXXXX 60
+FLNDV+ CELPESY+AYRKQQHRWHSGPMQLFRLC + KSKI
Sbjct: 205 IFLNDVKVLCELPESYQAYRKQQHRWHSGPMQLFRLCLPAVFKSKISTWKKANLVMLFFL 264
Query: 61 XXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYL 120
YSFTLFCVILP+TMFVPEAELP WV+CY+P MS+LNILPAPKSFPF++PYL
Sbjct: 265 LRKLILPFYSFTLFCVILPLTMFVPEAELPIWVICYVPVIMSVLNILPAPKSFPFVIPYL 324
Query: 121 LFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRS------------------------ 156
LFENTMSVTKFNAM+SGLFQLGS+YEWVVTKK+GR+
Sbjct: 325 LFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRTSSESDILALAEAADADARPPPAKL 384
Query: 157 ----SEGDLVGLVEKHSKQQRVGSAPNLDALTXXXXXXXXXXXXXXHNRIYRKEXXXXXX 212
SEG L + H +Q+ +A A NRI++KE
Sbjct: 385 HRGVSEGGLKEWAKLHKEQEDATAA--AAAAAAPGTPVKKSKAAKAPNRIFKKELALAFL 442
Query: 213 XXXXXXXXXXXXQGIHFYFLLFQGVSFLVVGLDLIGEQV 251
QG+HFYFLLFQGV+FL VGLDLIGEQV
Sbjct: 443 LLTAATRSLLSAQGLHFYFLLFQGVTFLAVGLDLIGEQV 481
>Os01g0766900 Conserved hypothetical protein
Length = 173
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/174 (77%), Positives = 138/174 (79%), Gaps = 1/174 (0%)
Query: 79 PMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGL 138
PMTMFVPEAELPAWVVCYIPATMS+LNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGL
Sbjct: 1 PMTMFVPEAELPAWVVCYIPATMSLLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGL 60
Query: 139 FQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQRVGSAPNLDALTXXXXXXXXXXXXXX 198
FQLGSAYEWVVTKKSGRSSEGDLV LVEK KQQRVGSAPNLD+L
Sbjct: 61 FQLGSAYEWVVTKKSGRSSEGDLVSLVEKQPKQQRVGSAPNLDSLA-KESHPKKDSKKKK 119
Query: 199 HNRIYRKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLVVGLDLIGEQVE 252
HNRIY+KE QGIHFYFLLFQGVSFLVVGLDLIGEQVE
Sbjct: 120 HNRIYQKELALSFLLLTAAARSLLSVQGIHFYFLLFQGVSFLVVGLDLIGEQVE 173
>Os02g0192500 Similar to Cellulose synthase-like protein (Fragment)
Length = 521
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSK-IGXXXXXXXXXXXX 59
V+L DV+ + ELP +++A+R QQHRW GP LFR ++I+++K +
Sbjct: 291 VYLGDVQVKSELPSTFKAFRFQQHRWSCGPANLFRKMLMEIVRNKKVTIWKKIHVIYNFF 350
Query: 60 XXXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPY 119
+F +C+I+P T+FVPE +P W YIP +++LN + P+SF + +
Sbjct: 351 LIRKIIAHIVTFAFYCLIIPATIFVPEVRIPKWGCVYIPTIITLLNSVGTPRSFHLLFFW 410
Query: 120 LLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRS 156
+LFEN MS+ + A + GL + G A EWVVT+K G +
Sbjct: 411 ILFENVMSLHRTKATLIGLLEAGRANEWVVTEKLGNA 447
>Os10g0406400 Conserved hypothetical protein
Length = 264
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSK-IGXXXXXXXXXXXX 59
+++ D+ + ELP +++AYR QQHRW G LFR +II +K +
Sbjct: 34 LYVGDIRVKSELPSTFQAYRHQQHRWTCGAANLFRKMAWEIITNKEVSMWKKYHLLYSFF 93
Query: 60 XXXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPY 119
+F +C+++P++ VPE +P W + YIP ++I+N + P S + +
Sbjct: 94 FVRRAIAPILTFLFYCIVIPLSAMVPEVTIPVWGLVYIPTAITIMNAIRNPGSVHLMPFW 153
Query: 120 LLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDL 161
+LFEN M++ + A +SGL + A +WVVT+K G + +L
Sbjct: 154 ILFENVMAMHRMRAALSGLLETARANDWVVTEKVGDQVKDEL 195
>Os03g0377700 Cellulose synthase-like A5
Length = 574
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 92/174 (52%), Gaps = 3/174 (1%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDI-IKSKIGXXXXXXXXXXXX 59
++L D+ + ELP +Y+AY +QQ RW G LFR D+ + K+
Sbjct: 341 IYLGDLRVKSELPSTYKAYCRQQFRWSCGGANLFRKMIWDVLVAKKVSSLKKIYILYSFF 400
Query: 60 XXXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPY 119
+F L+ VI+P+++ +PE LP W V YIP + I+ + P++ + +
Sbjct: 401 LVRRVVAPAVAFILYNVIIPVSVMIPELFLPIWGVAYIPTALLIVTAIRNPENLHTVPLW 460
Query: 120 LLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSS--EGDLVGLVEKHSKQ 171
+LFE+ MS+ + A ++GL QL +W+VTKK G ++ E + L++K K+
Sbjct: 461 ILFESVMSMHRLRAAVAGLLQLQEFNQWIVTKKVGNNAFDENNETPLLQKSRKR 514
>Os07g0630900 Conserved hypothetical protein
Length = 320
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 90/174 (51%), Gaps = 1/174 (0%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDIIKSK-IGXXXXXXXXXXXX 59
+++ D+ + ELP +Y AY +QQ RW G LFR +D++ +K I
Sbjct: 91 IYVGDIRVKSELPSTYGAYCRQQFRWACGGANLFRKIAMDVLVAKDISLLKKFYMLYSFF 150
Query: 60 XXXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPY 119
+ L+ +I+P+++ +PE +P W V YIP + I+ + P++ + +
Sbjct: 151 LVRRVVAPMVACVLYNIIVPLSVMIPELFIPIWGVAYIPMALLIITTIRNPRNLHIMPFW 210
Query: 120 LLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVGLVEKHSKQQR 173
+LFE+ M+V + A ++GL +L +W VTKK G S E V L+ K K+ R
Sbjct: 211 ILFESVMTVLRMRAALTGLMELSGFNKWTVTKKIGSSVEDTQVPLLPKTRKRLR 264
>Os06g0625700 Conserved hypothetical protein
Length = 213
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Query: 1 VFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCFVDI-IKSKIGXXXXXXXXXXXX 59
V+L D+ + ELP +++A+R QQHRW GP LFR V+I K+
Sbjct: 58 VYLGDLMVKSELPSTFKAFRYQQHRWSCGPANLFRKMLVEIATNKKVTLWKKIYVIYNFF 117
Query: 60 XXXXXXXXXYSFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPY 119
+F +C+++P T+ +PE E+P W Y+P+ ++ILN + P+ F +
Sbjct: 118 LVRKIIGHIVTFVFYCLVVPATVLIPEVEIPRWGYVYLPSIVTILNSIGTPRCQIFSIAL 177
Query: 120 LLFENTMSVT 129
+ M+ T
Sbjct: 178 QFYFQNMNPT 187
>Os03g0169500 Similar to Cellulose synthase-like A4
Length = 624
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 70 SFTLFCVILPMTMFVPEAELPAWVVCYIPATMSILNILPAPKSFPFIVPYLLFENTMSVT 129
+F +CV++P+++ VPE +P W + YIP ++I+N + P S + ++LFEN M++
Sbjct: 434 TFLFYCVVIPLSVMVPEVSIPVWGMVYIPTAITIMNAIRNPGSIHLMPFWILFENVMAMH 493
Query: 130 KFNAMISGLFQLGSAYEWVVTKKSGRSSEGDL 161
+ A ++GL + + +WVVT+K G + L
Sbjct: 494 RMRAALTGLLETMNVNQWVVTEKVGDHVKDKL 525
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,410,382
Number of extensions: 199635
Number of successful extensions: 566
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 12
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)