BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0457200 Os04g0457200|AK068563
(234 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0457200 Short-chain dehydrogenase/reductase SDR family... 481 e-136
AK119959 160 6e-40
Os12g0633800 133 1e-31
Os04g0390700 Glucose/ribitol dehydrogenase family protein 80 1e-15
Os04g0390800 Glucose/ribitol dehydrogenase family protein 77 2e-14
Os12g0464400 Glucose/ribitol dehydrogenase family protein 76 2e-14
Os08g0510400 Glucose/ribitol dehydrogenase family protein 75 4e-14
Os11g0265400 Glucose/ribitol dehydrogenase family protein 74 7e-14
Os02g0557700 Glucose/ribitol dehydrogenase family protein 74 1e-13
Os11g0499600 Glucose/ribitol dehydrogenase family protein 70 1e-12
Os04g0483500 Similar to B-keto acyl reductase 69 3e-12
Os12g0242700 Similar to 3-oxoacyl-[acyl-carrier-protein] re... 68 6e-12
Os03g0810800 Similar to Short-chain alcohol dehydrogenase 67 9e-12
Os11g0443700 Similar to Short chain alcohol dehydrogenase-like 66 2e-11
Os03g0299200 Similar to Alcohol dehydrogenase (Fragment) 65 6e-11
Os07g0691600 Similar to Alcohol dehydrogenase (Fragment) 64 9e-11
>Os04g0457200 Short-chain dehydrogenase/reductase SDR family protein
Length = 234
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MRGLEGDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEF 60
MRGLEGDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEF
Sbjct: 1 MRGLEGDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEF 60
Query: 61 QQVFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSD 120
QQVFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSD
Sbjct: 61 QQVFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSD 120
Query: 121 TLRLELKSFGINVMIVAPGGTKSNLGSNSTSKYVQIRDWKYYKKFEESLRARTDASQGPG 180
TLRLELKSFGINVMIVAPGGTKSNLGSNSTSKYVQIRDWKYYKKFEESLRARTDASQGPG
Sbjct: 121 TLRLELKSFGINVMIVAPGGTKSNLGSNSTSKYVQIRDWKYYKKFEESLRARTDASQGPG 180
Query: 181 STPAEDLAKRVVALVLKKNPPAWFAYGQFSAILSLLYYAPLWFRDYFYKIVMKC 234
STPAEDLAKRVVALVLKKNPPAWFAYGQFSAILSLLYYAPLWFRDYFYKIVMKC
Sbjct: 181 STPAEDLAKRVVALVLKKNPPAWFAYGQFSAILSLLYYAPLWFRDYFYKIVMKC 234
>AK119959
Length = 306
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 133/229 (58%), Gaps = 15/229 (6%)
Query: 13 LELDVRSDESARAAVADAVREL--GRVDVLVNNAGVHL-VAPLAEVPMEEFQQVFDTNVY 69
++LDV ES +AA D +R R+D+L+NNAGV+L V PL E P++ ++ FD N +
Sbjct: 59 VQLDVTDTESIKAAF-DNIRHCTKDRIDILINNAGVNLAVGPLIETPIDNIRKTFDANFF 117
Query: 70 GAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRLELKSF 129
G + + A +P MI R G +VN+GS+ A+A P+ YSASK+A+HALSDTLRLEL F
Sbjct: 118 GLIAVTQAAVPSMIRRRSGVVVNIGSVAAIACMPFGAPYSASKSAVHALSDTLRLELAGF 177
Query: 130 GINVMIVAPGGTKSNLGSNS-----TSKYVQIRDWKY------YKKFEESLRARTDASQG 178
GI V++VAPG KS++ N+ T+ D Y YK E+ ++ R + SQ
Sbjct: 178 GIKVVVVAPGAIKSSIADNTQKNLPTAPRGSDDDLGYLPADSLYKHVEDLVKFRAEFSQQ 237
Query: 179 PGSTPAEDLAKRVVALVLKKNPPAWFAYGQFSAILSLLYYAPLWFRDYF 227
TP+E A+ V V NP A+ G+ S + + YY P +D+
Sbjct: 238 GEPTPSETFARNVRKWVAASNPGAYLFTGKKSLTVWIAYYLPTKVKDWI 286
>Os12g0633800
Length = 302
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 3 GLEGDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEFQQ 62
GL+ D L LDV SDES AVA + E GRVDVLVNNAG+ PLAE+ E ++
Sbjct: 59 GLDAD----HLPLDVTSDESVEGAVARVLAEHGRVDVLVNNAGIGCTGPLAELRGEAVRR 114
Query: 63 VFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTL 122
D N G +R++ AV P M R G +VNVGS+ A PWAG Y ASKAA+HA +D L
Sbjct: 115 AMDVNFLGQLRMVRAVAPHMASRRSGRVVNVGSVVGTAATPWAGPYCASKAAVHAATDAL 174
Query: 123 RLELKSFGINVMIVAP 138
R+EL+ FG++V+ V P
Sbjct: 175 RVELRPFGVHVVKVVP 190
>Os04g0390700 Glucose/ribitol dehydrogenase family protein
Length = 368
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 6 GDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVP-MEEFQQVF 64
G P L + DV + R V V GR+D LVNNAG+ V EVP + F+QV
Sbjct: 114 GSPDVLAVPGDVARPDDCRRFVQATVEHFGRLDHLVNNAGLANVCWFEEVPDVANFKQVL 173
Query: 65 DTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRL 124
D N +G + HA +P + + +G I S +A+ P Y+ASKAA+H ++TLR+
Sbjct: 174 DVNFWGTVHPTHAALPHL-KASRGKIFVNSSASAVLAMPRMSFYNASKAAVHNFAETLRM 232
Query: 125 ELKSFGINVMIVAPGGTKSNL 145
EL + V + PG S +
Sbjct: 233 ELHG-EVGVTVATPGWVDSEM 252
>Os04g0390800 Glucose/ribitol dehydrogenase family protein
Length = 361
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 6 GDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVP-MEEFQQVF 64
G P L++ DV S + R V D +R GR+D LVNNA + V E+ + F+++
Sbjct: 105 GSPGVLVVAGDVSSPDDCRKFVDDTIRYFGRLDHLVNNASIWQVGKFEELTDVNHFRKLM 164
Query: 65 DTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRL 124
D N +G + IP + ++ +G IV V S ++ P Y+ASKAA L +TLR+
Sbjct: 165 DINFWGHVYPTRHAIPHL-KKTRGRIVGVTSNSSYIFMPRNTFYNASKAAAANLYETLRM 223
Query: 125 ELKSFGINVMIVAPGGTKSNL 145
EL GI + V PG +S +
Sbjct: 224 ELAGDGIAITEVIPGVVESEI 244
>Os12g0464400 Glucose/ribitol dehydrogenase family protein
Length = 393
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 6 GDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVP-MEEFQQVF 64
G P ++L DV + E + V A+ GR+D LV NAG+ V E+P + + F
Sbjct: 140 GAPDVIILPGDVANPEDCKRFVQTAIDHYGRLDHLVCNAGIASVGAFQEIPDVTNYSSQF 199
Query: 65 DTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRL 124
D N +G+++ +P + +R +G IV S T P P Y+A+ AAL +TLR
Sbjct: 200 DVNFWGSVQSTFEALPHL-KRSRGRIVVTASATGWNPVPRMTFYNAANAALINFYETLRT 258
Query: 125 ELKSFGINVMIVAPGGTKSNL 145
EL S + + IV PG +S +
Sbjct: 259 ELGS-QVGITIVTPGWIESEM 278
>Os08g0510400 Glucose/ribitol dehydrogenase family protein
Length = 284
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 7/139 (5%)
Query: 13 LELDVRSDESA-RAAVADAVRELGRVDVLVNNAGVH--LVAPLAEVPMEEFQQVFDTNVY 69
+ELDV S A AAV A GR+DVL+NNAG+ + +PL + P +E++ + TN+
Sbjct: 80 VELDVASGGPALEAAVQSAWDAFGRIDVLINNAGLRGGVHSPL-DWPEDEWETLIKTNLT 138
Query: 70 GAMRLIHAVIPQMIE-REQGTIVNVGSITALAPG--PWAGVYSASKAALHALSDTLRLEL 126
G+ + V +M + + +G+++N+ S++ L G P + Y+ASK+A+H + + LEL
Sbjct: 139 GSWLVAKHVCRRMRDAKLKGSVINISSVSGLNRGHLPGSTGYAASKSAMHYATKLMALEL 198
Query: 127 KSFGINVMIVAPGGTKSNL 145
++GI V +APG KS +
Sbjct: 199 GAYGIRVNSIAPGIFKSEI 217
>Os11g0265400 Glucose/ribitol dehydrogenase family protein
Length = 328
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 39/232 (16%)
Query: 7 DPRYLLLELDVRS-DESARAAV--ADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEFQQ- 62
+ R +L +D+ S +ES + V A+++ VD +++NA A +EE +Q
Sbjct: 94 NSRVEVLPMDLSSGEESLKEHVHEAESLFSNAGVDYMIHNAAFERPKRRA---LEETEQG 150
Query: 63 ---VFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALS 119
FD NV+G + L + P M++R G V + S P P +YSASK AL+
Sbjct: 151 LKATFDVNVFGTITLTRLLAPSMMDRGMGHFVVMSSAAGKVPSPGQALYSASKHALNGYF 210
Query: 120 DTLRLELKSFGINVMIVAPGGTKSNLGSNSTSKYVQIRDWKYYKKFEESLRARTDASQGP 179
+LR EL + GI V +V PG ++ S +TS +SQ P
Sbjct: 211 SSLRSELCTKGIKVTVVCPGPIEAPQSSGATS-----------------------SSQKP 247
Query: 180 GS---TPAEDLAKRVVALVLKKNPPAWFAYGQFSAILSLLYYAP---LWFRD 225
S P E A+ + AW +Y ++ L+ Y P LW D
Sbjct: 248 SSEKRVPVERCAELTIVAATHGLKEAWISYQPVLGVMYLVQYMPTVGLWLMD 299
>Os02g0557700 Glucose/ribitol dehydrogenase family protein
Length = 225
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 1 MRGLEGD----PRYLLLELDVRSDESARAAVADAVRELGRV-DVLVNNAG-VHLVAPLAE 54
+R LE + R+ L DVRSD S A +A AV E +V D++VNNAG ++
Sbjct: 59 VRSLEAEIATPARHFLTVADVRSD-SNMAELAKAVVEKKQVPDIIVNNAGTINKNNKTWS 117
Query: 55 VPMEEFQQVFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAA 114
VP EEF V DTN+ G ++ IP MIE++ G IVN+ S + Y ASK A
Sbjct: 118 VPAEEFDTVVDTNIKGTANVLRHFIPLMIEKKHGIIVNLSSGWGRSAAAEVAPYCASKWA 177
Query: 115 LHALSDTLRLELKSFGINVMIVAPGGTKSNL-----GSNSTSKYVQIRDW 159
+ L+ +L EL G+ + ++PG +++ GS S S Y W
Sbjct: 178 IEGLTRSLAKELPP-GLAAIALSPGVVNTDMLNSCFGS-SASLYQSTEQW 225
>Os11g0499600 Glucose/ribitol dehydrogenase family protein
Length = 354
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 106/231 (45%), Gaps = 23/231 (9%)
Query: 6 GDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVP-MEEFQQVF 64
G P L++ D+ + A+ AV + V G+++ LV NAG+ E+ + F V
Sbjct: 100 GAPDVLVVPADITKVDDAKRAVEETVAHFGKLNHLVANAGIWSSCFFEEITNITAFHNVI 159
Query: 65 DTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRL 124
D N +GA+ + +P + + +G IV S+ P Y+ASK A+ +TLR
Sbjct: 160 DLNFWGAVYPTYFALPYL-KASRGNIVVTSSVAGRVPTARMSFYNASKGAVIRFYETLRA 218
Query: 125 ELKSFGINVMIVAPGGTKSNLGSNSTSKYVQIRDWKYYKKFEESLRARTDASQGP---GS 181
EL S + V I+ PG SNL + K +Q +D + +E R D + GP G
Sbjct: 219 ELGSH-VRVTILTPGYVVSNL---TMGKGIQ-KDG--HVGIDEEAR---DINVGPLPVGK 268
Query: 182 TPAEDLAKRVVALVLKKNP----PAWFAYGQFSAILSLLYYAPLWFRDYFY 228
T E LAK VVA V + + P W Y F ++ WF FY
Sbjct: 269 T--ETLAKVVVAAVRRGDYYVTWPGW--YWPFHMVMCTAPELVDWFSRTFY 315
>Os04g0483500 Similar to B-keto acyl reductase
Length = 318
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 9 RYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLA----EVPMEEFQQVF 64
R +L+ + AA+ D++R L V VLVN+AG+ P A EV E + +
Sbjct: 103 RTFVLDFAAEGLAAKVAALGDSIRGLD-VGVLVNSAGMSY--PYARYFHEVDEELMRNLI 159
Query: 65 DTNVYGAMRLIHAVIPQMIEREQGTIVNVGS-ITALAPG-PWAGVYSASKAALHALSDTL 122
NV R+ HAV+P M+ER++G IVN+GS +++ P P VY+A+KA + S L
Sbjct: 160 RLNVEALTRVTHAVLPGMVERKRGAIVNIGSGASSILPSYPLYSVYAATKAYVDQFSRCL 219
Query: 123 RLELKSFGINVMIVAP 138
+E K+ GI+V P
Sbjct: 220 YVEYKNKGIDVQCQVP 235
>Os12g0242700 Similar to 3-oxoacyl-[acyl-carrier-protein] reductase 1,
chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl
carrier protein reductase 1) (Beta- keto acyl-carrier
protein reductase 1)
Length = 304
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 11 LLLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEFQQVFDTNVYG 70
+ DV + + + A+ G +DVLVNNAG+ A L + ++Q+V D N+ G
Sbjct: 114 ITFSADVSIEAEVESMMRAAIDTWGTLDVLVNNAGITRDALLMRMKRTQWQEVVDVNLTG 173
Query: 71 AMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRLELKSFG 130
A M+ +++G I+N+ S++ + Y A+KA + L+ + E S
Sbjct: 174 VYLCAQAAAGVMMMKKKGRIINITSVSGIIGNIGQANYCAAKAGVIGLTKAMAREYGSRN 233
Query: 131 INVMIVAPGGTKSN----LGSNSTSKYVQIRDWKYYKKFEE 167
INV VAPG SN LG N K ++ + K EE
Sbjct: 234 INVNAVAPGWVTSNMTAKLGDNVEQKALETIPLGRFGKPEE 274
>Os03g0810800 Similar to Short-chain alcohol dehydrogenase
Length = 281
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 4 LEGDPRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGV--HLVAPLAEVPMEEFQ 61
L GD L + DV +E AV + G +D++VNNAG + + + E +
Sbjct: 62 LGGDQDVLFVHCDVSVEEDVARAVDATAEKFGTLDIMVNNAGFTGQKITDIRNIDFSEVR 121
Query: 62 QVFDTNVYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDT 121
+V D N+ G + MI ++G+I+++GS++++ G Y+A+K A+ L+
Sbjct: 122 KVIDINLVGVFHGMKHAARIMIPNKKGSIISLGSVSSVIGGLGPHSYTATKHAVVGLTKN 181
Query: 122 LRLELKSFGINVMIVAP 138
+ EL GI V V+P
Sbjct: 182 VAGELGKHGIRVNCVSP 198
>Os11g0443700 Similar to Short chain alcohol dehydrogenase-like
Length = 260
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 12 LLELDVRSDESARAAVADAVRELGRVDVLVNNAGVHLVAPLAEVPMEEFQQVFDTNVYGA 71
+ ++ VR+D A A A+ + G++ +LVNNAG + P A++ EE ++ TN
Sbjct: 70 VCDVAVRADREALAGRVSAMFD-GKLSILVNNAGTAYLKPAADLTPEETSRLMTTNFESC 128
Query: 72 MRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRLELKSFGI 131
L P + + +G+IVN+ S+ ++ +YSA+K A++ ++ L E S GI
Sbjct: 129 FHLSQLFYPLLKDSGRGSIVNISSVASVLAFHSLPIYSAAKGAMNQVTRNLACEWASDGI 188
Query: 132 NVMIVAPG 139
V VAPG
Sbjct: 189 RVNSVAPG 196
>Os03g0299200 Similar to Alcohol dehydrogenase (Fragment)
Length = 333
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 8 PRYLLLELDVRSDESARAAVADAVRELGRVDVLVNNAGV-----HLVAPLAEVPMEEFQQ 62
P + DV +E AV AV GR+DVL NNAGV + EF +
Sbjct: 100 PHVGFVRCDVSVEEDVERAVERAVARYGRLDVLCNNAGVLGRQTRAAKSILSFDAGEFDR 159
Query: 63 VFDTNVYGA-MRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDT 121
V N GA + + HA + M +R G+I++V S+ + G Y+ASK A+ L+
Sbjct: 160 VLRVNALGAALGMKHAAL-AMTQRRAGSIISVASVAGVLGGLGPHAYTASKHAIVGLTKN 218
Query: 122 LRLELKSFGINVMIVAPGGTKS 143
EL + GI V ++P G +
Sbjct: 219 AACELGAHGIRVNCISPFGVAT 240
>Os07g0691600 Similar to Alcohol dehydrogenase (Fragment)
Length = 319
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 13 LELDVRSDESARAAVADAVRELGRVDVLVNNAGV-----HLVAPLAEVPMEEFQQVFDTN 67
+ DV + AVA + + GR+DVL NNAGV +A + EF +V N
Sbjct: 97 VHCDVAEEADVERAVATTLEQHGRLDVLCNNAGVLGRQTRGAKSIASLDAAEFARVLRVN 156
Query: 68 VYGAMRLIHAVIPQMIEREQGTIVNVGSITALAPGPWAGVYSASKAALHALSDTLRLELK 127
GA + M+ R G+IV+V S+ + G Y+ASK AL L+ EL
Sbjct: 157 ALGAALGMKHAARAMVPRRSGSIVSVASVAGVLGGLGPHAYTASKHALVGLTKNAACELG 216
Query: 128 SFGINVMIVAPGGTKS 143
GI V ++P G +
Sbjct: 217 EHGIRVNCISPFGVAT 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,587,792
Number of extensions: 286545
Number of successful extensions: 869
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 22
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)