FiT-DB / Search/ Help/ Sample detail

Os03g0810800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Short-chain alcohol dehydrogenase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.023) R2 : 0.198
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.513 (0.0483) R2dN8 : 0.256 R2N8 : 0.198
σ : 0.432
deviance : 85.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.26 0.34 10.6 -0.716 0.428 0.838 0.471 -2.2 0.259 23.1 8.2 919 -- --
55.8 0.348 10.6 -0.292 0.452 0.742 0.157 -- 0.389 22.7 12.65 999 -- --
52.94 0.339 10.6 -0.707 0.487 0.791 -- -1.87 0.264 22.6 6.993 1144 -- --
55.69 0.348 10.6 -0.463 0.549 0.748 -- -- 0.309 22.7 3.975 6988 -- --
62.57 0.368 10.6 -0.703 -- 1.14 -- -1.72 0.233 -- -7.093 868 -- --
65.05 0.378 10.5 -0.08 0.575 -- 0.152 -- 0.501 22.9 -- -- -- --
65.15 0.378 10.5 -0.0861 0.574 -- -- -- 0.501 22.9 -- -- -- --
65.17 0.376 10.6 -0.38 -- 1.13 -- -- 0.325 -- 0.3663 866 -- --
59.72 0.36 10.6 -- 0.553 0.492 -- -- 0.413 22.8 7.79 6920 -- --
85.63 0.432 10.5 -0.0737 -- -- -- -- 0.505 -- -- -- -- --
65.35 0.378 10.5 -- 0.574 -- -- -- 0.51 22.9 -- -- -- --
68.57 0.386 10.6 -- -- 0.982 -- -- 0.387 -- 11.06 852 -- --
85.78 0.432 10.5 -- -- -- -- -- 0.513 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.75 temperature 10 1440 > th dose dependent rect. 17 1
6 52.02 wind 9 43200 > th dose dependent sin 15 NA
7 52.02 temperature 10 1440 > th dose dependent rect. 13 9
27 52.10 wind 9 43200 > th dose independent rect. 17 8
29 52.11 wind 9 43200 > th dose independent sin 14 NA
38 52.13 wind 9 43200 < th dose independent sin 14 NA
39 52.13 wind 7 43200 > th dose independent rect. 15 12
44 52.14 wind 7 43200 < th dose independent rect. 15 12
53 52.16 wind 9 43200 < th dose independent rect. 18 5
56 52.16 wind 7 43200 > th dose dependent rect. 14 18
59 52.18 wind 7 43200 > th dose independent rect. 14 18
64 52.20 wind 7 43200 < th dose independent rect. 14 18
76 52.22 wind 7 43200 > th dose independent rect. 14 21
77 52.22 wind 7 43200 < th dose independent rect. 14 21
79 52.23 wind 9 43200 > th dose independent rect. 19 4
112 52.28 wind 9 43200 < th dose independent rect. 17 8
141 52.32 wind 5 43200 > th dose dependent rect. 19 1
162 52.36 temperature 30 1440 < th dose dependent rect. 17 2
163 52.36 wind 9 43200 > th dose dependent rect. 19 4
164 52.36 wind 5 43200 > th dose dependent rect. 15 10
168 52.37 temperature 10 1440 > th dose dependent sin 19 NA
169 52.37 wind 7 43200 > th dose dependent rect. 17 8
197 52.40 wind 7 43200 > th dose dependent rect. 9 18
199 52.40 wind 7 43200 > th dose dependent rect. 10 22
219 52.43 wind 7 43200 > th dose dependent rect. 9 16
300 52.50 temperature 10 720 > th dose dependent rect. 12 23
303 52.51 wind 7 43200 < th dose independent rect. 6 21
317 52.52 wind 7 43200 > th dose independent rect. 6 21
353 52.55 wind 7 43200 > th dose independent no NA NA
354 52.55 wind 7 43200 < th dose independent no NA NA
359 52.55 wind 7 43200 < th dose independent rect. 10 23
361 52.55 wind 7 43200 < th dose independent rect. 18 23
365 52.55 temperature 30 1440 < th dose dependent rect. 13 10
374 52.56 wind 7 43200 > th dose independent rect. 2 23
375 52.56 wind 7 43200 > th dose independent rect. 10 23
376 52.56 wind 7 43200 < th dose independent rect. 2 23
379 52.56 temperature 30 1440 < th dose dependent rect. 14 8
397 52.57 wind 7 43200 > th dose independent rect. 18 23
408 52.58 wind 7 43200 < th dose independent rect. 19 1
437 52.58 temperature 10 720 > th dose dependent rect. 16 23
438 52.59 radiation 30 4320 < th dose independent rect. 6 2
449 52.59 wind 7 43200 < th dose independent rect. 22 23
464 52.60 wind 7 43200 > th dose independent rect. 22 23
506 52.62 radiation 30 4320 < th dose independent rect. 18 14
527 52.63 radiation 30 4320 < th dose independent rect. 22 10
609 52.67 radiation 30 4320 < th dose independent rect. 3 5
632 52.67 temperature 30 720 < th dose dependent rect. 24 22
652 52.69 radiation 30 4320 < th dose independent rect. 1 7
663 52.69 wind 7 43200 > th dose dependent sin 21 NA
677 52.69 temperature 15 720 > th dose dependent rect. 14 23
705 52.71 wind 7 43200 > th dose independent rect. 19 1
795 52.75 temperature 10 720 > th dose dependent no NA NA
869 52.78 wind 9 43200 < th dose independent rect. 8 15
916 52.79 wind 7 43200 > th dose dependent rect. 24 23
947 52.81 wind 9 43200 > th dose independent rect. 9 16
994 52.82 temperature 15 720 > th dose dependent rect. 1 23
997 52.83 wind 9 43200 < th dose independent rect. 8 13