Os08g0510400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os08g0510400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.79 | 0.269 | 11.2 | 0.962 | 0.243 | -0.778 | 0.733 | 2.11 | 0.143 | 4.65 | 25.6 | 1550 | -- | -- |
| 33.66 | 0.27 | 11.2 | 0.483 | 0.258 | -0.578 | 0.656 | -- | 0.153 | 4.87 | 23.4 | 7523 | -- | -- |
| 34.04 | 0.272 | 11.2 | 0.954 | 0.225 | -0.805 | -- | 2.24 | 0.133 | 3.92 | 25.7 | 1625 | -- | -- |
| 34.91 | 0.275 | 11.2 | 0.471 | 0.257 | -0.579 | -- | -- | 0.143 | 4.08 | 23.5 | 7574 | -- | -- |
| 36.21 | 0.28 | 11.2 | 1.04 | -- | -0.913 | -- | 2.71 | 0.144 | -- | 25.88 | 1772 | -- | -- |
| 46.58 | 0.32 | 11.3 | 0.221 | 0.25 | -- | 0.679 | -- | -0.0406 | 4.88 | -- | -- | -- | -- |
| 47.72 | 0.323 | 11.3 | 0.218 | 0.254 | -- | -- | -- | -0.0441 | 4.42 | -- | -- | -- | -- |
| 37.95 | 0.287 | 11.2 | 0.424 | -- | -0.572 | -- | -- | 0.122 | -- | 26.73 | 7628 | -- | -- |
| 38.54 | 0.289 | 11.3 | -- | 0.257 | -0.477 | -- | -- | 0.0307 | 4.29 | 28.32 | 7588 | -- | -- |
| 51.18 | 0.334 | 11.3 | 0.228 | -- | -- | -- | -- | -0.0374 | -- | -- | -- | -- | -- |
| 48.97 | 0.327 | 11.3 | -- | 0.258 | -- | -- | -- | -0.0684 | 4.4 | -- | -- | -- | -- |
| 41.83 | 0.301 | 11.2 | -- | -- | -0.491 | -- | -- | 0.0189 | -- | 29.28 | 7629 | -- | -- |
| 52.55 | 0.338 | 11.3 | -- | -- | -- | -- | -- | -0.0627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.66 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 4 | 30.71 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 9 | 30.76 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 11 | 30.76 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 17 | 30.79 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 21 |
| 19 | 30.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 14 |
| 31 | 30.82 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 15 |
| 38 | 30.83 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 20 |
| 43 | 30.83 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 47 | 30.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 53 | 30.84 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 57 | 30.85 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 75 | 30.85 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 101 | 30.88 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 103 | 30.88 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 106 | 30.88 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 21 |
| 109 | 30.88 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 135 | 30.89 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 137 | 30.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 156 | 30.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 173 | 30.91 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 179 | 30.92 | wind | 7 | 43200 | > th | dose independent | sin | 1 | NA |
| 180 | 30.92 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 194 | 30.92 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 209 | 30.93 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 213 | 30.93 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 214 | 30.93 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 229 | 30.94 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 266 | 30.97 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 389 | 31.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 22 |
| 463 | 31.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 490 | 31.16 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 566 | 31.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 621 | 31.33 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 648 | 31.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 909 | 31.68 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |