Os04g0457200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Short-chain dehydrogenase/reductase SDR family protein.
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Os04g0457200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Short-chain dehydrogenase/reductase SDR family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.86 | 0.375 | 9.45 | -0.98 | 1.91 | 0.735 | 0.00528 | 0.811 | -0.546 | 11.2 | 79.6 | 4159 | -- | -- |
| 64.64 | 0.374 | 9.45 | -1 | 1.96 | 0.813 | -0.0283 | -- | -0.583 | 11.1 | 82 | 3874 | -- | -- |
| 63.86 | 0.372 | 9.45 | -0.98 | 1.91 | 0.735 | -- | 0.811 | -0.546 | 11.2 | 79.59 | 4159 | -- | -- |
| 64.6 | 0.374 | 9.45 | -1.01 | 1.96 | 0.844 | -- | -- | -0.574 | 11.1 | 81.99 | 3874 | -- | -- |
| 231.29 | 0.712 | 9.47 | -1.08 | -- | 1.65 | -- | 0.0744 | -0.456 | -- | 79.59 | 4159 | -- | -- |
| 75.03 | 0.406 | 9.44 | -0.98 | 1.87 | -- | -0.11 | -- | -0.522 | 11.2 | -- | -- | -- | -- |
| 75.09 | 0.406 | 9.44 | -0.985 | 1.87 | -- | -- | -- | -0.522 | 11.2 | -- | -- | -- | -- |
| 221.17 | 0.696 | 9.47 | -1.07 | -- | 1.67 | -- | -- | -0.463 | -- | 83.82 | 7355 | -- | -- |
| 75.01 | 0.403 | 9.41 | -- | 1.89 | 1.17 | -- | -- | -0.351 | 11.3 | 67.36 | 27073 | -- | -- |
| 293.43 | 0.8 | 9.49 | -1.03 | -- | -- | -- | -- | -0.538 | -- | -- | -- | -- | -- |
| 100.65 | 0.469 | 9.42 | -- | 1.88 | -- | -- | -- | -0.412 | 11.2 | -- | -- | -- | -- |
| 251.39 | 0.741 | 9.44 | -- | -- | 1.64 | -- | -- | -0.345 | -- | 83.82 | 7355 | -- | -- |
| 321.39 | 0.837 | 9.46 | -- | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 2 | 60.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 3 | 60.50 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 4 | 60.53 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 8 | 60.78 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 17 | 60.99 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 20 | 61.05 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 29 | 61.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 30 | 61.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 32 | 61.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 36 | 61.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 41 | 61.38 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 42 | 61.39 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 48 | 61.52 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 52 | 61.60 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 54 | 61.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 62 | 61.67 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 63 | 61.67 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 71 | 61.77 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 73 | 61.79 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 75 | 61.81 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 102 | 61.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 111 | 62.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 134 | 62.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 136 | 62.14 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 0 | NA |
| 165 | 62.29 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 169 | 62.31 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 173 | 62.32 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 176 | 62.34 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 181 | 62.36 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 182 | 62.38 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 23 | NA |
| 183 | 62.39 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 23 | NA |
| 185 | 62.39 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 199 | 62.42 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 200 | 62.42 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 10 |
| 212 | 62.46 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 216 | 62.50 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 228 | 62.54 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 231 | 62.55 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 250 | 62.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 266 | 62.65 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 300 | 62.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 346 | 62.86 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 351 | 62.87 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 358 | 62.90 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 379 | 62.94 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 24 | 10 |
| 405 | 62.99 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 411 | 63.00 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 421 | 63.03 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 2 | 8 |
| 424 | 63.04 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 483 | 63.14 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 14 |
| 508 | 63.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 511 | 63.19 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 520 | 63.20 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 633 | 63.35 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 660 | 63.38 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 4 |
| 675 | 63.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 685 | 63.41 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 706 | 63.43 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 3 |
| 708 | 63.43 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 754 | 63.48 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 16 |
| 767 | 63.50 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 792 | 63.53 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 794 | 63.53 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 12 |
| 803 | 63.54 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 8 |
| 804 | 63.54 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 10 | 10 |
| 825 | 63.56 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 11 | 6 |
| 850 | 63.58 | wind | 9.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 859 | 63.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 865 | 63.60 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 929 | 63.66 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 18 | NA |