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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0499600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.61 (0.0474) R2 : 0.7
β1 : -0.907 (0.18) R2dD : 0.022 R2D : -0.0475
β2 : 0.904 (0.113) R2dC : 0.046 R2C : -0.0405
β3 : 2.33 (0.139) R2dE : 0.252 R2E : 0.335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.79 (0.112) R2dN8 : 0.275 R2N8 : 0.435
σ : 0.858
deviance : 339.59
__
_____
C
peak time of C : 14.4
E
wheather : temperature
threshold : 26.72
memory length : 8180
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
328.21 0.851 5.74 -2.74 0.938 3.06 -0.909 -6.75 1.72 14.4 26.8 5427 -- --
341.76 0.861 5.63 -0.995 0.778 2.31 -0.662 -- 1.69 14.9 26.79 9070 -- --
330.99 0.847 5.74 -2.75 0.936 3.08 -- -6.72 1.73 14.3 26.89 5400 -- --
339.59 0.858 5.61 -0.907 0.904 2.33 -- -- 1.79 14.4 26.72 8180 -- --
376.02 0.903 5.75 -2.83 -- 2.9 -- -7.19 1.8 -- 26.9 4967 -- --
548.03 1.1 5.4 0.131 0.767 -- -1.15 -- 2.64 14.9 -- -- -- --
552.47 1.1 5.41 0.105 0.763 -- -- -- 2.63 15 -- -- -- --
380.96 0.909 5.59 -0.961 -- 2.28 -- -- 1.81 -- 26.8 7679 -- --
361.67 0.886 5.58 -- 0.865 2.11 -- -- 1.91 14.4 26.9 7980 -- --
585.98 1.13 5.41 0.0727 -- -- -- -- 2.61 -- -- -- -- --
552.76 1.1 5.41 -- 0.761 -- -- -- 2.62 15 -- -- -- --
402.87 0.935 5.55 -- -- 1.99 -- -- 1.98 -- 26.76 7679 -- --
586.12 1.13 5.41 -- -- -- -- -- 2.6 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.54 temperature 25 14400 > th dose independent rect. 10 1
2 332.03 temperature 25 14400 < th dose independent rect. 10 1
5 335.53 humidity 90 43200 > th dose independent rect. 21 1
9 337.06 temperature 20 14400 < th dose independent rect. 21 1
12 337.91 temperature 25 14400 < th dose independent rect. 7 7
13 338.07 temperature 25 14400 > th dose independent rect. 17 1
14 338.10 temperature 25 14400 > th dose independent rect. 7 7
25 338.72 temperature 25 14400 < th dose independent rect. 17 1
39 339.48 temperature 20 14400 > th dose independent rect. 21 2
51 340.11 temperature 25 14400 < th dose independent rect. 7 11
53 340.14 temperature 25 14400 < th dose independent rect. 7 13
55 340.24 humidity 90 43200 > th dose dependent rect. 22 1
66 340.66 temperature 25 14400 > th dose independent rect. 7 13
67 340.69 temperature 25 14400 > th dose independent rect. 7 11
71 340.77 temperature 25 14400 < th dose independent rect. 10 10
73 340.80 humidity 90 43200 > th dose independent rect. 17 7
78 340.86 temperature 20 14400 > th dose independent rect. 20 5
79 340.87 temperature 25 14400 > th dose independent rect. 10 10
83 340.95 temperature 20 14400 > th dose dependent rect. 19 1
85 340.99 temperature 25 14400 < th dose independent rect. 17 3
91 341.07 temperature 25 14400 > th dose independent rect. 17 3
106 341.18 humidity 90 43200 > th dose dependent rect. 20 4
110 341.23 temperature 20 14400 < th dose independent rect. 19 6
113 341.29 temperature 25 14400 < th dose independent sin 0 NA
116 341.37 temperature 25 14400 > th dose independent sin 0 NA
130 341.45 wind 7 43200 > th dose independent rect. 5 11
135 341.48 radiation 40 43200 > th dose dependent rect. 10 1
152 341.61 temperature 25 14400 > th dose independent rect. 4 14
159 341.65 temperature 25 14400 > th dose independent rect. 4 16
162 341.70 humidity 90 43200 > th dose dependent rect. 17 8
211 342.19 humidity 90 43200 > th dose dependent rect. 15 10
217 342.25 humidity 90 43200 > th dose dependent rect. 18 6
237 342.47 wind 7 43200 < th dose independent rect. 5 11
267 342.70 humidity 90 43200 > th dose independent rect. 18 1
291 342.90 wind 7 43200 > th dose dependent rect. 10 5
306 343.09 humidity 90 43200 > th dose independent sin 16 NA
334 343.33 humidity 80 43200 > th dose independent rect. 12 1
339 343.38 humidity 90 43200 < th dose independent rect. 18 1
368 343.63 wind 7 43200 < th dose independent rect. 7 9
370 343.65 temperature 25 14400 < th dose independent rect. 7 1
377 343.69 temperature 25 4320 > th dose dependent rect. 8 11
387 343.75 humidity 90 43200 < th dose independent rect. 21 1
436 344.14 temperature 25 4320 > th dose dependent rect. 8 15
518 344.65 humidity 90 43200 > th dose dependent sin 16 NA
522 344.70 temperature 25 4320 > th dose dependent sin 22 NA
529 344.73 humidity 90 43200 > th dose independent rect. 8 21
544 344.81 humidity 90 43200 > th dose independent rect. 12 15
560 344.91 humidity 90 43200 < th dose independent rect. 17 8
622 345.16 wind 7 43200 > th dose independent sin 1 NA
639 345.27 temperature 25 14400 > th dose independent rect. 17 23
685 345.45 humidity 90 43200 > th dose independent rect. 11 17
743 345.64 temperature 25 4320 > th dose dependent rect. 21 22
767 345.73 temperature 20 14400 > th dose dependent rect. 17 16
774 345.76 temperature 25 14400 > th dose independent rect. 7 1
790 345.82 humidity 90 43200 < th dose independent sin 16 NA
798 345.83 temperature 25 14400 > th dose independent rect. 10 23
804 345.86 temperature 25 14400 > th dose independent no NA NA
807 345.86 temperature 25 4320 > th dose dependent rect. 15 23
826 345.93 wind 7 43200 < th dose independent sin 1 NA
827 345.93 humidity 90 43200 > th dose independent rect. 12 22
856 346.03 humidity 90 43200 > th dose independent rect. 15 19
857 346.03 temperature 20 14400 > th dose dependent sin 14 NA
858 346.03 temperature 25 4320 > th dose dependent rect. 13 6
861 346.04 temperature 25 14400 < th dose independent rect. 17 22
868 346.07 temperature 25 14400 > th dose independent rect. 19 23
892 346.15 temperature 25 4320 > th dose dependent rect. 13 23
929 346.27 temperature 25 14400 < th dose independent no NA NA
932 346.29 radiation 40 43200 < th dose independent rect. 10 1
933 346.29 temperature 25 4320 > th dose dependent no NA NA
946 346.36 temperature 25 14400 < th dose independent rect. 10 23
977 346.44 temperature 25 4320 > th dose dependent rect. 9 5
978 346.45 humidity 90 43200 < th dose independent rect. 17 6
982 346.46 temperature 25 14400 > th dose independent rect. 13 23
992 346.48 humidity 90 43200 < th dose independent rect. 9 19