Os04g0390800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glucose/ribitol dehydrogenase family protein.
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Os04g0390800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glucose/ribitol dehydrogenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.95 | 0.661 | 3.62 | 1.72 | 0.59 | 48.5 | 0.516 | 97.1 | -0.0501 | 23.3 | 15.17 | 1735 | -- | -- |
| 206.07 | 0.674 | 2.98 | 0.0975 | 0.578 | 2.78 | 0.557 | -- | -0.117 | 23.3 | 15.17 | 1735 | -- | -- |
| 199.08 | 0.657 | 3.63 | 1.7 | 0.588 | 48.5 | -- | 97.2 | -0.0536 | 23.3 | 15.17 | 1735 | -- | -- |
| 200.08 | 0.659 | 2.96 | 0.269 | 0.578 | 2.82 | -- | -- | -0.0667 | 23.3 | 14.8 | 1736 | -- | -- |
| 220.68 | 0.692 | 3.61 | 1.74 | -- | 48.9 | -- | 97.8 | -0.0431 | -- | 15.17 | 1735 | -- | -- |
| 220.57 | 0.696 | 2.99 | -0.0222 | 0.623 | -- | 0.231 | -- | -0.146 | 23.3 | -- | -- | -- | -- |
| 220.8 | 0.696 | 2.99 | -0.0316 | 0.622 | -- | -- | -- | -0.147 | 23.3 | -- | -- | -- | -- |
| 220.61 | 0.692 | 2.95 | 0.296 | -- | 2.97 | -- | -- | -0.0592 | -- | 14.68 | 1735 | -- | -- |
| 201.8 | 0.662 | 2.98 | -- | 0.584 | 2.56 | -- | -- | -0.1 | 23.3 | 14.7 | 1726 | -- | -- |
| 245.03 | 0.731 | 2.97 | -0.0161 | -- | -- | -- | -- | -0.141 | -- | -- | -- | -- | -- |
| 220.83 | 0.695 | 2.98 | -- | 0.622 | -- | -- | -- | -0.143 | 23.3 | -- | -- | -- | -- |
| 222.58 | 0.695 | 2.97 | -- | -- | 2.97 | -- | -- | -0.101 | -- | 14.6 | 1731 | -- | -- |
| 245.03 | 0.731 | 2.97 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.12 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 5 | 191.72 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 6 | 192.00 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 3 |
| 9 | 192.08 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 12 | 192.27 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 16 | 192.39 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 17 | 192.43 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 18 | 192.45 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 23 | 192.57 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 7 |
| 24 | 192.60 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 14 | 6 |
| 25 | 192.63 | humidity | 90.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 27 | 192.69 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 28 | 192.71 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 30 | 192.80 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 10 |
| 44 | 193.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 11 |
| 57 | 193.57 | humidity | 90.0 | 720 | > th | dose independent | rect. | 11 | 9 |
| 61 | 193.72 | humidity | 90.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 74 | 194.06 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 10 | 12 |
| 115 | 195.00 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 143 | 195.46 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 182 | 196.05 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 189 | 196.17 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 14 | 14 |
| 237 | 196.86 | humidity | 90.0 | 720 | < th | dose independent | rect. | 10 | 11 |
| 252 | 197.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 10 |
| 276 | 197.43 | temperature | 20.0 | 720 | < th | dose independent | sin | 19 | NA |
| 279 | 197.47 | temperature | 20.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 285 | 197.54 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 291 | 197.57 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 314 | 197.74 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 326 | 197.84 | temperature | 20.0 | 720 | > th | dose independent | sin | 19 | NA |
| 329 | 197.86 | temperature | 20.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 331 | 197.88 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 8 |
| 380 | 198.25 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 384 | 198.29 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 13 |
| 396 | 198.38 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 405 | 198.44 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 424 | 198.51 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 4 |
| 469 | 198.81 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 2 | NA |
| 490 | 198.95 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 523 | 199.11 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 587 | 199.45 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 672 | 199.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 674 | 199.78 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 689 | 199.84 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 1 | 14 |
| 703 | 199.88 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 736 | 199.99 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 755 | 200.06 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 787 | 200.15 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 865 | 200.32 | temperature | 10.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 866 | 200.32 | humidity | 80.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 915 | 200.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 931 | 200.50 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 932 | 200.50 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 935 | 200.51 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 937 | 200.51 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 966 | 200.61 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 984 | 200.67 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 985 | 200.67 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |