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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0242700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 1) (Beta- keto acyl-carrier protein reductase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0133) R2 : 0.000861
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0175 (0.0279) R2dN8 : 0.00111 R2N8 : 0.000861
σ : 0.25
deviance : 28.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.43 0.237 2.97 -0.14 0.0976 5.96 -0.158 -22.1 0.0224 8.65 1.488 187 -- --
52.02 0.336 2.91 0.322 0.211 3.68 -0.566 -- 0.254 7.46 1.498 155 -- --
25.49 0.235 2.97 -0.139 0.0984 5.91 -- -21.8 0.0231 9.38 1.52 189 -- --
28.27 0.248 2.94 -0.0623 0.0504 1.57 -- -- -0.0752 8.21 1.5 275 -- --
26.05 0.238 2.98 -0.146 -- 6.12 -- -23 0.023 -- 1.541 180 -- --
28.14 0.249 2.94 0.0196 0.0727 -- -0.296 -- 0.0176 7.78 -- -- -- --
28.26 0.249 2.94 0.0139 0.0826 -- -- -- 0.019 10 -- -- -- --
26.72 0.241 2.94 -0.00798 -- 0.912 -- -- 0.0239 -- 1.5 275 -- --
26.15 0.238 2.94 -- 0.106 1.03 -- -- 0.0266 8.48 1.509 275 -- --
28.68 0.25 2.94 0.0128 -- -- -- -- 0.0189 -- -- -- -- --
28.27 0.249 2.94 -- 0.0826 -- -- -- 0.0175 10 -- -- -- --
26.72 0.241 2.94 -- -- 0.909 -- -- 0.0249 -- 1.5 275 -- --
28.68 0.25 2.94 -- -- -- -- -- 0.0175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.39 atmosphere 1000.0 270 < th dose independent rect. 16 1
3 25.42 atmosphere 1000.0 270 < th dose dependent rect. 16 1
4 25.42 precipitation 0.1 270 > th dose dependent rect. 13 5
7 25.43 precipitation 0.1 270 > th dose dependent rect. 16 3
8 25.44 precipitation 0.1 270 > th dose independent rect. 16 1
9 25.44 precipitation 0.1 270 > th dose dependent rect. 16 1
17 25.50 precipitation 0.1 270 > th dose independent rect. 16 3
36 25.62 temperature 20.0 10 < th dose independent rect. 19 1
72 25.87 precipitation 0.1 270 > th dose independent rect. 13 5
98 26.19 atmosphere 1005.0 10 < th dose independent rect. 20 1
107 26.32 precipitation 0.1 270 > th dose dependent rect. 24 18
114 26.38 atmosphere 1005.0 10 < th dose independent rect. 18 3
115 26.38 precipitation 0.1 270 > th dose dependent sin 20 NA
116 26.41 wind 1.0 30 < th dose independent rect. 10 1
117 26.41 temperature 10.0 1440 > th dose independent rect. 11 1
121 26.41 atmosphere 995.0 1440 > th dose independent rect. 11 1
124 26.41 precipitation 0.1 1440 < th dose independent rect. 11 1
126 26.41 temperature 10.0 1440 > th dose independent rect. 12 23
129 26.41 wind 1.0 30 < th dose dependent rect. 10 1
130 26.41 precipitation 0.1 1440 < th dose dependent rect. 11 1
147 26.48 humidity 70.0 4320 > th dose independent rect. 21 1
149 26.49 temperature 25.0 30 > th dose dependent rect. 10 1
150 26.50 humidity 70.0 30 < th dose independent rect. 10 1
155 26.52 wind 3.0 30 < th dose independent rect. 20 1
160 26.53 precipitation 0.1 270 > th dose dependent rect. 13 13
173 26.56 temperature 25.0 30 > th dose independent rect. 10 1
174 26.56 radiation 20.0 30 > th dose independent rect. 10 1
175 26.56 precipitation 0.1 270 > th dose dependent rect. 16 10
176 26.57 atmosphere 1005.0 30 > th dose independent rect. 10 1
177 26.57 atmosphere 1010.0 30 < th dose independent rect. 10 1
183 26.57 humidity 80.0 30 < th dose dependent rect. 10 1
186 26.58 radiation 40.0 30 < th dose independent rect. 10 1
195 26.59 atmosphere 1000.0 30 > th dose dependent rect. 10 1
209 26.62 wind 5.0 30 < th dose dependent rect. 10 1
210 26.62 temperature 30.0 10 < th dose dependent rect. 20 1
217 26.63 temperature 30.0 30 < th dose independent rect. 10 1
224 26.64 humidity 60.0 30 > th dose independent rect. 10 1
228 26.64 wind 9.0 4320 > th dose dependent rect. 13 2
237 26.65 temperature 10.0 30 > th dose independent rect. 10 1
244 26.65 precipitation 0.1 30 < th dose independent rect. 10 1
246 26.65 temperature 10.0 30 > th dose independent rect. 11 23
249 26.65 atmosphere 1010.0 30 < th dose dependent rect. 20 1
250 26.65 precipitation 0.1 30 < th dose dependent rect. 10 1
252 26.66 wind 1.0 30 > th dose independent rect. 10 1
257 26.68 temperature 25.0 90 < th dose dependent rect. 18 1
259 26.69 temperature 20.0 90 < th dose dependent rect. 2 1
260 26.69 radiation 1.0 30 > th dose dependent rect. 10 1
274 26.73 radiation 40.0 30 < th dose dependent rect. 10 1
282 26.75 humidity 90.0 10 < th dose independent rect. 20 1
290 26.76 humidity 80.0 10 > th dose independent rect. 20 1
296 26.77 wind 5.0 10 < th dose dependent rect. 20 1
314 26.81 humidity 70.0 4320 > th dose independent rect. 22 6
316 26.81 humidity 50.0 30 > th dose dependent rect. 10 1
322 26.82 atmosphere 1015.0 30 < th dose dependent rect. 10 1
327 26.84 wind 9.0 10 < th dose independent rect. 21 23
328 26.84 atmosphere 1010.0 10 < th dose independent rect. 21 23
333 26.85 atmosphere 1010.0 10 < th dose independent rect. 5 14
345 26.87 wind 1.0 30 > th dose dependent rect. 10 1
349 26.88 humidity 50.0 10 > th dose dependent rect. 20 1
376 26.91 wind 1.0 10 > th dose independent rect. 20 1
378 26.91 temperature 10.0 10 > th dose independent rect. 20 1
380 26.91 temperature 30.0 10 < th dose independent rect. 20 1
381 26.91 humidity 50.0 10 > th dose independent rect. 20 1
384 26.91 atmosphere 995.0 10 > th dose independent rect. 20 1
388 26.91 radiation 1.0 10 < th dose independent rect. 20 1
393 26.91 precipitation 0.1 10 < th dose independent rect. 20 1
394 26.91 wind 9.0 4320 > th dose independent rect. 13 2
397 26.91 temperature 10.0 10 > th dose independent rect. 21 23
398 26.91 radiation 1.0 10 < th dose dependent rect. 20 1
403 26.91 precipitation 0.1 10 < th dose dependent rect. 20 1
407 26.92 atmosphere 1010.0 10 < th dose independent sin 5 NA
413 26.93 temperature 20.0 90 < th dose independent rect. 2 1
415 26.93 atmosphere 1010.0 10 < th dose independent rect. 11 23
422 26.94 humidity 50.0 4320 > th dose independent rect. 16 1
431 26.95 humidity 70.0 4320 > th dose independent rect. 22 8
435 26.95 humidity 80.0 4320 < th dose dependent rect. 22 2
440 26.96 temperature 20.0 10 < th dose independent sin 21 NA
477 27.00 wind 9.0 4320 < th dose independent rect. 13 2
557 27.04 atmosphere 1010.0 10 < th dose independent rect. 4 23
565 27.05 temperature 10.0 10 > th dose dependent rect. 20 1
579 27.07 temperature 20.0 10 > th dose independent sin 21 NA
584 27.07 atmosphere 995.0 10 > th dose dependent rect. 20 1
593 27.08 wind 9.0 30 < th dose independent rect. 11 23
633 27.11 atmosphere 1010.0 10 > th dose dependent rect. 12 1
717 27.13 wind 1.0 30 > th dose dependent rect. 20 1
749 27.13 humidity 80.0 4320 < th dose dependent rect. 21 11
772 27.15 precipitation 0.1 270 < th dose independent sin 21 NA
775 27.15 temperature 25.0 30 > th dose independent rect. 20 1
776 27.15 temperature 10.0 1440 > th dose independent rect. 21 1
779 27.15 temperature 30.0 1440 < th dose independent rect. 21 1
783 27.15 humidity 50.0 1440 > th dose independent rect. 21 1
789 27.15 atmosphere 995.0 1440 > th dose independent rect. 21 1
790 27.15 radiation 1.0 1440 < th dose independent rect. 21 1
812 27.15 humidity 80.0 4320 < th dose independent rect. 22 11
816 27.15 temperature 10.0 1440 > th dose independent rect. 22 23
819 27.15 precipitation 0.1 270 < th dose dependent sin 21 NA
821 27.15 radiation 10.0 1440 < th dose dependent rect. 21 1
843 27.16 atmosphere 1000.0 720 > th dose independent rect. 11 6
844 27.16 precipitation 0.1 270 > th dose independent rect. 13 13
866 27.16 precipitation 0.1 270 > th dose dependent rect. 17 21
872 27.17 atmosphere 1000.0 720 > th dose independent rect. 7 9
877 27.17 atmosphere 1010.0 30 > th dose dependent sin 0 NA
879 27.17 temperature 25.0 30 > th dose dependent rect. 20 1
886 27.17 atmosphere 1000.0 720 < th dose dependent rect. 8 7
900 27.18 precipitation 0.1 270 > th dose independent sin 20 NA
904 27.18 radiation 10.0 10 > th dose independent rect. 6 1
922 27.18 precipitation 0.1 270 > th dose independent rect. 17 9
939 27.18 precipitation 0.1 270 > th dose dependent no NA NA
942 27.18 humidity 90.0 30 < th dose dependent rect. 20 1
944 27.18 radiation 10.0 10 > th dose dependent rect. 6 1
946 27.18 radiation 40.0 14400 < th dose dependent rect. 21 1