BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0412800 Os04g0412800|AK060508
(448 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0412800 Glutaredoxin domain containing protein 684 0.0
Os07g0159900 Glutaredoxin domain containing protein 132 4e-31
Os02g0102000 Glutaredoxin domain containing protein 119 4e-27
Os03g0648800 Glutaredoxin domain containing protein 112 7e-25
Os04g0641300 Glutaredoxin domain containing protein 105 1e-22
Os07g0659900 Glutaredoxin domain containing protein 104 1e-22
Os02g0748800 Glutaredoxin domain containing protein 103 3e-22
Os03g0356400 Glutaredoxin domain containing protein 102 7e-22
Os05g0471100 Glutaredoxin domain containing protein 95 1e-19
Os06g0226100 Glutaredoxin domain containing protein 91 1e-18
Os01g0235900 Glutaredoxin domain containing protein 89 9e-18
Os05g0353600 Glutaredoxin domain containing protein 88 2e-17
Os01g0829400 Glutaredoxin domain containing protein 87 2e-17
>Os04g0412800 Glutaredoxin domain containing protein
Length = 448
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/448 (81%), Positives = 363/448 (81%)
Query: 1 MGCISSKLLPPGPGDARGGSGARATVRGRVDHVVSLTSTTYGVLDLHPKHGXXXXXXXXX 60
MGCISSKLLPPGPGDARGGSGARATVRGRVDHVVSLTSTTYGVLDLHPKHG
Sbjct: 1 MGCISSKLLPPGPGDARGGSGARATVRGRVDHVVSLTSTTYGVLDLHPKHGAAAAAAAAA 60
Query: 61 XXXXXXXCQEKVQETQAQPPQEDKPISREWKRARPPPLVVPSAKKPAPAGKLDSGLEVIN 120
CQEKVQETQAQPPQEDKPISREWKRARPPPLVVPSAKKPAPAGKLDSGLEVIN
Sbjct: 61 AAAAAVACQEKVQETQAQPPQEDKPISREWKRARPPPLVVPSAKKPAPAGKLDSGLEVIN 120
Query: 121 AWEIMAGLEXXXXXXXXXXXXXXXXXXRWSPARVIAMALPSPKKSATKRRNTPGKENSPL 180
AWEIMAGLE RWSPARVIAMALPSPKKSATKRRNTPGKENSPL
Sbjct: 121 AWEIMAGLEDADAADASPAKKPAKQPSRWSPARVIAMALPSPKKSATKRRNTPGKENSPL 180
Query: 181 QRCSGNNNSSNINKTGDVNVDRVLRPYNSIDNSKLSRMSKRFSPVSARIVRKPGPPETGG 240
QRCSGNNNSSNINKTGDVNVDRVLRPYNSIDNSKLSRMSKRFSPVSARIVRKPGPPETGG
Sbjct: 181 QRCSGNNNSSNINKTGDVNVDRVLRPYNSIDNSKLSRMSKRFSPVSARIVRKPGPPETGG 240
Query: 241 GMXXXXXXXXXXFDPELLASIERELSEEGAHIKRMVGSEXXXXXXXXXXXMVAEGKCPPG 300
GM FDPELLASIERELSEEGAHIKRMVGSE MVAEGKCPPG
Sbjct: 241 GMSSSRRSLSPLFDPELLASIERELSEEGAHIKRMVGSEKPKHPKAAPPAMVAEGKCPPG 300
Query: 301 GADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXX 360
GADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGY
Sbjct: 301 GADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYREELRLLLGGREV 360
Query: 361 XXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVWCAGCAGVRFVMCRDCNGSRK 420
PAVFVRGRHVGGAAEVT PRARVWCAGCAGVRFVMCRDCNGSRK
Sbjct: 361 RVPAVFVRGRHVGGAAEVTKLEEEGKLKALLQGLPRARVWCAGCAGVRFVMCRDCNGSRK 420
Query: 421 VRVDGERKETVQCGECNENGLVRCPICS 448
VRVDGERKETVQCGECNENGLVRCPICS
Sbjct: 421 VRVDGERKETVQCGECNENGLVRCPICS 448
>Os07g0159900 Glutaredoxin domain containing protein
Length = 256
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 90/159 (56%), Gaps = 9/159 (5%)
Query: 296 KCPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXX 355
+CPPGG AVVLYTTTLRGIR+TFE+CN VRA +E DV ERDVSMD G
Sbjct: 99 RCPPGGEGAVVLYTTTLRGIRKTFEDCNGVRALLENLDVAFQERDVSMDRGL-RDELWSV 157
Query: 356 XXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXX-------XXPRARVWCAGCAGVR 408
P +FVRGR VGGAA+V A C C G+R
Sbjct: 158 TGEKAVPPRLFVRGRDVGGAAQVLALHEDGRLLALLSPGSNKNRSAAAAAAKCDACGGLR 217
Query: 409 FVMCRDCNGSRKVRVDGERKETVQCGECNENGLVRCPIC 447
FV+C +C+GSRKV DGER V+C CNENGLV C +C
Sbjct: 218 FVVCGECDGSRKV-FDGERGRGVRCRGCNENGLVMCALC 255
>Os02g0102000 Glutaredoxin domain containing protein
Length = 294
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 90/166 (54%), Gaps = 22/166 (13%)
Query: 305 VVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXX---- 360
V+LYTTTLRG+R TFE CNAVRAA+ +H V ERD+SMD G+
Sbjct: 129 VLLYTTTLRGVRATFEACNAVRAALHSHGVAFRERDISMDRGFREELRHRISLDHHDRAP 188
Query: 361 XXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR---VWCAGCAGVRFVMCRDCNG 417
P +FVRG HVGGAAEV PRAR C GC G+RF+ C DCNG
Sbjct: 189 LVPRLFVRGNHVGGAAEVARLEEEGKLAALLEGLPRARPGGGCCDGCGGMRFLPCFDCNG 248
Query: 418 SRKV--------------RVDGERK-ETVQCGECNENGLVRCPICS 448
SRK+ R + R V+CGECNENGLV CPICS
Sbjct: 249 SRKLCFSLPTPVPAAAAARSNKTRAVVVVRCGECNENGLVLCPICS 294
>Os03g0648800 Glutaredoxin domain containing protein
Length = 324
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 83/161 (51%), Gaps = 6/161 (3%)
Query: 294 EGKCPPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXX 353
E +CPPGG AVVLYTT+LRG+R+TFE+C VR +E V +ERDVSM + Y
Sbjct: 164 ETRCPPGGERAVVLYTTSLRGVRKTFEDCATVRRLLEGLRVAFLERDVSMHAPYRDELRA 223
Query: 354 XXXXXXXXX--PAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPR---ARVWCAGCAGVR 408
P +FV GR++GGA EV PR CA C G
Sbjct: 224 LLVGLDDAAVPPRLFVDGRYLGGANEVVTLHEQARLRPVLRRAPRRGAGDAACAVCGGAW 283
Query: 409 FVMCRDCNGSRKVR-VDGERKETVQCGECNENGLVRCPICS 448
FV+C C+GS ++ V C CNENGLV CP+CS
Sbjct: 284 FVVCGACSGSHRLYDAAAAAGGRVPCTGCNENGLVPCPLCS 324
>Os04g0641300 Glutaredoxin domain containing protein
Length = 443
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 298 PPGGADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXX-- 355
PPGG V+Y T+LRG+R+TF +C +VR+ + ++ V+L ERDVSM + +
Sbjct: 280 PPGGDKKAVVYFTSLRGVRKTFVDCCSVRSILRSYGVRLDERDVSMHAVFRAELAELLGP 339
Query: 356 -XXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARV-------WCAGCAGV 407
P VFV GR++GGA +V A V CA C V
Sbjct: 340 GGFACAALPRVFVDGRYLGGAEDVHALHEAAELARMLEGCEAAPVRKLGYMEACAACGDV 399
Query: 408 RFVMCRDCNGSRKVRVDGERK--ETVQCGECNENGLVRCPIC 447
RFV C C GS K+ VD + E +C +CNENGL+RCP+C
Sbjct: 400 RFVPCETCYGSCKIFVDDDVDAGEFRRCPDCNENGLIRCPVC 441
>Os07g0659900 Glutaredoxin domain containing protein
Length = 211
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 305 VVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXX--XXXXX 362
VVLYTT+LRG+RRTF +C++VRA + V + ERDVSMD+ +
Sbjct: 64 VVLYTTSLRGVRRTFADCSSVRAILRGFRVAVDERDVSMDAAFRRELRSLLDARGRAFSL 123
Query: 363 PAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR--VWCAGCAGVRFVMCRDCNGSRK 420
P + V GR VGGA EV C GC GVRFV C C G RK
Sbjct: 124 PQLLVGGRLVGGADEVKQLHESGQLRRLLDGAAGQDPAYVCDGCGGVRFVPCTACGGGRK 183
Query: 421 VRVDGERKETVQCGECNENGLVRCPIC 447
V V+ E +CG+CNENGLVRCP C
Sbjct: 184 VFVE-EEDRVQRCGDCNENGLVRCPNC 209
>Os02g0748800 Glutaredoxin domain containing protein
Length = 369
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 305 VVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXXXXPA 364
VVLY T+LRGIR+T+E+C A ++ ++ + V + ERD+SM +G+ P
Sbjct: 219 VVLYLTSLRGIRKTYEDCWATKSILQGYGVLVDERDLSMHAGF-KEELHAALGAPGSLPQ 277
Query: 365 VFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPR----------ARVWCAGCAGVRFVMCRD 414
VF GRH+GGA EV A C+GC GVRFV C +
Sbjct: 278 VFADGRHLGGAEEVRRMHESGELSKALGDCEMAPPAAAGKGIALDACSGCGGVRFVPCEE 337
Query: 415 CNGSRKVRVDGERKETVQCGECNENGLVRCPIC 447
C+GS KV ++ E +C +CNENGLVRCP+C
Sbjct: 338 CSGSCKVFLE-ELDTFRRCPDCNENGLVRCPLC 369
>Os03g0356400 Glutaredoxin domain containing protein
Length = 203
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 76/148 (51%), Gaps = 5/148 (3%)
Query: 304 AVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXX--XX 361
AVVLYTT+LRG+RRTF +C AVRA + V + ERDVSMD+
Sbjct: 55 AVVLYTTSLRGVRRTFADCAAVRAVLRGLRVAVDERDVSMDASLRRELQSLLAARGRPFS 114
Query: 362 XPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR--VWCAGCAGVRFVMCRDCNGSR 419
P + V R VGGA EV C GC GVRFV C C+GSR
Sbjct: 115 LPQLLVGARLVGGADEVRQLHEAGELRRLLEGAAGQDPAFVCGGCGGVRFVPCPACDGSR 174
Query: 420 KVRVDGERKETVQCGECNENGLVRCPIC 447
KV V E +CG+CNENGLVRCP C
Sbjct: 175 KVFVQ-EEGCARRCGDCNENGLVRCPNC 201
>Os05g0471100 Glutaredoxin domain containing protein
Length = 257
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 299 PGGADA--VVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYX-XXXXXXX 355
PGG + VVLY T+LR +R T+E+C AVRA + + ERD+SMD +
Sbjct: 101 PGGGEGARVVLYYTSLRVVRGTYEDCRAVRAILRGLRAAVDERDLSMDPAFLPELAALLP 160
Query: 356 XXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVWCAGCAGVRFVMCRDC 415
P VFV GRH+GGA EV C CAG R+V+C C
Sbjct: 161 HRRHVALPQVFVNGRHLGGAEEVRRLHESGELRRIVAAANPTPASCGRCAGERYVLCGSC 220
Query: 416 NGSRKVRVDGERKETVQCGECNENGLVRCPIC 447
+GS K C CNENGLVRCP C
Sbjct: 221 DGSHKRYSHKVGGGFRACAMCNENGLVRCPDC 252
>Os06g0226100 Glutaredoxin domain containing protein
Length = 383
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 79/173 (45%), Gaps = 30/173 (17%)
Query: 305 VVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXXX--- 361
VV+Y T+LRGIR+T+E+C A + + ++ V++ ERD+S+ +GY
Sbjct: 211 VVVYLTSLRGIRQTYEDCCATASILRSYGVRVDERDLSLHAGYKDELRAALGDGAGGGGG 270
Query: 362 -------XPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVW-------------- 400
P VFV G HVGGA +V
Sbjct: 271 VPGQGRPLPQVFVDGCHVGGAEDVRRMHESGELTGTLLKACDTAAAAVAAVGKGGRQLAP 330
Query: 401 ----CAGCAGVRFVMCRDCNGSRKVRVDGERKETV--QCGECNENGLVRCPIC 447
C GC GVRFV C C+GS KV VD + +C ECNENGLVRCP+C
Sbjct: 331 PSEPCGGCGGVRFVPCDACSGSCKVFVDDDEDGGAFRRCPECNENGLVRCPVC 383
>Os01g0235900 Glutaredoxin domain containing protein
Length = 391
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 298 PPGGADA-VVLYTTTLRGIRRTFEECNAVRAAIEA----------HDVKLIERDVSMDSG 346
PPG + VVLYTTTLRG+RRTFE+C R A+EA V + ERDVS+
Sbjct: 220 PPGASGGGVVLYTTTLRGVRRTFEDCERARKAVEACAEAVSAAGGSPVVVDERDVSLHGE 279
Query: 347 YXXXXXXXXXXXXXXXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRAR-------- 398
Y P +FV GR++GG A+ RAR
Sbjct: 280 Y-LRELRGLAGAGDAPPRLFVMGRYLGG-ADACAELAESGKLREMMRWARARGEACAAKD 337
Query: 399 -VWCAGCAGVRFVMCRDCNGSRKV---RVDGERKETVQCGECNENGLVRCPIC 447
C GC G RFV C +C GS KV + +C +CNENGL+ CPIC
Sbjct: 338 GRGCEGCGGARFVPCWECGGSCKVVAAGATAAAADVERCAKCNENGLMLCPIC 390
>Os05g0353600 Glutaredoxin domain containing protein
Length = 248
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 70/148 (47%), Gaps = 2/148 (1%)
Query: 301 GADAVVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXXXXXXX 360
G VVLY T+LR +R TFE+C VRA + V + ERDVSMD+ Y
Sbjct: 98 GERRVVLYFTSLRAVRGTFEDCRDVRAILRGLRVAVDERDVSMDAAYLAELRALMRRDRP 157
Query: 361 XXPAVFVRGRHVGGAAEVTXXXXXXXXXXXXXXXPRARVW-CAGCAGVRFVMCRDCNGSR 419
P +FV GR VG A EV RA CA C G RFV C C+GS
Sbjct: 158 ALPQLFVGGRLVGDADEVRLLHESGELHRVVAGAARAAATPCASCGGTRFVPCGTCDGSH 217
Query: 420 KVRVDGERKETVQCGECNENGLVRCPIC 447
+ R + C CNENGLVRC C
Sbjct: 218 R-RYSEKTGGFRVCTACNENGLVRCAAC 244
>Os01g0829400 Glutaredoxin domain containing protein
Length = 255
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 305 VVLYTTTLRGIRRTFEECNAVRAAIEAHDVKLIERDVSMDSGYXXXXXXXX-XXXXXXXP 363
VVLY T+L +R T+E+C AVRA + + ERD++MD Y P
Sbjct: 106 VVLYFTSLHVVRSTYEDCRAVRAILRGLRASVDERDLAMDPRYLQELGALLPRARGVTLP 165
Query: 364 AVFVRGRHVGGAAEVTXXXXX-XXXXXXXXXXPRARVWCAGCAGVRFVMCRDCNGSRKVR 422
VFV GRH+GGA EV A C+ C G R+V+C CNGS K
Sbjct: 166 QVFVGGRHLGGAEEVRRLHESGELRRVVAGAGATAFAACSRCGGERYVLCGSCNGSHKRY 225
Query: 423 VDGERKETVQCGECNENGLVRCPICS 448
C CNENGLVRCP CS
Sbjct: 226 SLKGGGGFRTCAGCNENGLVRCPDCS 251
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,888,551
Number of extensions: 578648
Number of successful extensions: 2264
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2227
Number of HSP's successfully gapped: 13
Length of query: 448
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 344
Effective length of database: 11,605,545
Effective search space: 3992307480
Effective search space used: 3992307480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)