BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0850700 Os03g0850700|AK062083
(261 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0850700 Similar to Phosphatidylinositol phosphatidylch... 536 e-153
Os01g0926800 Phosphatidylinositol transfer protein-like, N-... 290 8e-79
Os01g0264700 Cellular retinaldehyde binding/alpha-tocophero... 98 7e-21
Os03g0724100 Cellular retinaldehyde binding/alpha-tocophero... 98 8e-21
Os06g0671800 Cellular retinaldehyde binding/alpha-tocophero... 85 5e-17
Os02g0752000 Cellular retinaldehyde-binding/triple function... 85 5e-17
Os02g0321500 Phosphatidylinositol transfer protein-like, N-... 82 4e-16
Os03g0219100 Phosphatidylinositol transfer protein-like, N-... 77 9e-15
AK107322 77 2e-14
Os05g0267800 Cellular retinaldehyde-binding/triple function... 76 2e-14
Os02g0721800 Similar to Phosphatidylinositol transfer-like ... 71 8e-13
Os01g0874700 emp24/gp25L/p24 family protein 70 1e-12
Os05g0545000 Similar to Phosphatidylinositol transfer-like ... 69 3e-12
>Os03g0850700 Similar to Phosphatidylinositol phosphatidylcholine transfer
protein sec14 cytosolic-like protein
Length = 261
Score = 536 bits (1381), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 1 MDYCKQQERDGHRDDGDVTEWKKVAELRAVVEAQDPACKEEDDYQLRRFLRARDHNIGKA 60
MDYCKQQERDGHRDDGDVTEWKKVAELRAVVEAQDPACKEEDDYQLRRFLRARDHNIGKA
Sbjct: 1 MDYCKQQERDGHRDDGDVTEWKKVAELRAVVEAQDPACKEEDDYQLRRFLRARDHNIGKA 60
Query: 61 SAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARR 120
SAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARR
Sbjct: 61 SAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARR 120
Query: 121 DLDEFKRYVVYVLDRTCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYY 180
DLDEFKRYVVYVLDRTCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYY
Sbjct: 121 DLDEFKRYVVYVLDRTCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYY 180
Query: 181 PERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAEDY 240
PERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAEDY
Sbjct: 181 PERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAEDY 240
Query: 241 GGKLKLVSPLINGATESNRRR 261
GGKLKLVSPLINGATESNRRR
Sbjct: 241 GGKLKLVSPLINGATESNRRR 261
>Os01g0926800 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 247
Score = 290 bits (742), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/229 (61%), Positives = 173/229 (75%), Gaps = 4/229 (1%)
Query: 20 EWKKVAELRAVVEAQDPACKEEDDYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGR 79
EW KVAELRA VEAQDP KE D+ LRRFLRARDHN+ KASAML+K L+W+RE PGG
Sbjct: 13 EWLKVAELRATVEAQDPHAKEVDNLTLRRFLRARDHNVEKASAMLLKALRWRREAVPGG- 71
Query: 80 AIADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARRDLDEFKRYVVYVLDRTCAR 139
++ +E+V+ +L +K+YM G DR GRP++ F A+HF A+RD+ +FK Y VY+LD CAR
Sbjct: 72 SVPEEKVQSDLDDDKVYMGGADRTGRPILLAFPAKHFSAKRDMPKFKSYCVYLLDSICAR 131
Query: 140 LGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFMAA 199
+ GQEKF + DL+GWGY NCDIRAY+AA+EIMQNYYPERLG+ +IHVPY+FM A
Sbjct: 132 IPR--GQEKFVCIVDLKGWGY-SNCDIRAYIAAIEIMQNYYPERLGKALMIHVPYMFMKA 188
Query: 200 WKIIYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAEDYGGKLKLVS 248
WK+IYPFID+ T+ KFVFV DK L L IDDS + + GGKL VS
Sbjct: 189 WKMIYPFIDNVTRDKFVFVDDKSLQEVLHQEIDDSQIPDTLGGKLAPVS 237
>Os01g0264700 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 311
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 104/205 (50%), Gaps = 12/205 (5%)
Query: 43 DYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQGY-D 101
D RFLRAR+ N+ KAS M+ ++W+ P + I ++V E K+Y Y D
Sbjct: 47 DASCLRFLRARNWNVQKASKMMKSAVKWRVSYMP--QKINWDDVAHEAETGKIYRADYKD 104
Query: 102 RQGRP-LVYGFGARHFPARRDLDEFKRYVVYVLDRTCARLGGNGGQEKFAAVADLQGWGY 160
+ GR LV G + + + +Y+VY L++ L + QEK + D Q W
Sbjct: 105 KHGRTVLVLRPGLENTTSGKGQ---IKYLVYCLEKAIMSLTED--QEKMVWLTDFQSWTL 159
Query: 161 YGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFMAAWKIIYPFIDDNT--KKKFVFV 218
G+ ++ + ++Q+ YPERLG L + P +F + WKI+ PF+D T K KFV+
Sbjct: 160 -GSTPLKVTRETVNVLQDCYPERLGLAILYNPPRIFESFWKIVKPFLDHETYKKVKFVYS 218
Query: 219 ADKDLHATLRDAIDDSNLAEDYGGK 243
+DK+ + D D L +GG+
Sbjct: 219 SDKESQKIMADVFDLDKLDSAFGGR 243
>Os03g0724100 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 299
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 123/250 (49%), Gaps = 18/250 (7%)
Query: 7 QERDGHRDDGDVTEWK--KVAELRAVVEAQDPACKEE-DDYQLRRFLRARDHNIGKASAM 63
+++ R D D E + K+ ELRA + + K+ + LRR+L AR+ N+ K+ M
Sbjct: 5 RKKHASRFDSDDIEQQEAKIQELRAALGPLSSSGKKYCTEACLRRYLEARNWNVDKSRKM 64
Query: 64 LVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQGY-DRQGRPLVYGFGARHFPARRDL 122
L + L+W+ +P I E+ E K+Y + DR+GR +V PA+++
Sbjct: 65 LEESLKWRTAYRPED--IRWPEISVESETGKMYRASFVDREGRTVVI-----MRPAKQNT 117
Query: 123 DEFK---RYVVYVLDRTCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNY 179
+ R++VY L+ L + QEK + D GW I+ I+QN+
Sbjct: 118 SSHEGQVRFLVYTLENAILSLPED--QEKMVWLIDFTGWTLANATPIKTARECANILQNH 175
Query: 180 YPERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKK--FVFVADKDLHATLRDAIDDSNLA 237
YPERL L + P VF A WK++ F+D + +K FV++ +++ L ID L
Sbjct: 176 YPERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPEVLP 235
Query: 238 EDYGGKLKLV 247
++GGK +V
Sbjct: 236 VEFGGKNNVV 245
>Os06g0671800 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 517
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 43 DYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKL----YMQ 98
D L +FLRARD G A ML K L W+RE K G A D++ GE +L Y+
Sbjct: 182 DVVLLKFLRARDFKAGAAFDMLRKTLHWRREWK-GFAAGTDDDDDGEALPAELADACYLD 240
Query: 99 GYDRQGRPLVY--------------GFGARHFPARRDLDEFKRYVVYVLDRTCARLGGN- 143
G DR+G P+ Y G AR F R+ V ++ A+L
Sbjct: 241 GADREGHPVCYNALGVFADDAVYKKALGTEEGKAR-----FLRWRVRAMESHVAKLDLRP 295
Query: 144 GGQEKFAAVADLQGWGYYGNCDIR-AYVAALEIMQNYYPERLGRVFLIHVPYVFMAAWKI 202
GG V DL+ D+R A L++ Q+ YPE + R LI+VP+ + A +
Sbjct: 296 GGVASLLQVTDLKNSPGPAKKDLRVAMKQVLDLFQDNYPELVARNILINVPFWYYAFSTL 355
Query: 203 IYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAEDYGG 242
YPF+ TK KFV + TL I + YGG
Sbjct: 356 FYPFMTQRTKSKFVIARPSKVTETLLKYIPIEAIPVKYGG 395
>Os02g0752000 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 378
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 23 KVAELRAVV-EAQDPACKEEDDYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGRAI 81
K+ E+RA + + A D + R+L AR+ + KA+ ML K L+W+ E KP I
Sbjct: 24 KIGEVRAALGQLSGKAALYCSDASIARYLVARNWEVKKATKMLKKTLKWRSEYKPD--EI 81
Query: 82 ADEEVRGELAQEKLYMQGY-DRQGRPLVYGFGARHFPARRDLDEFK---RYVVYVLDRTC 137
+E+ E A K+Y Y D+ GR ++ P ++ + K RY+VY ++
Sbjct: 82 RWDEIANEAATGKIYRTDYFDKSGRSILV-----MRPGVQNTKKAKGQIRYLVYCMENAI 136
Query: 138 ARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFM 197
L + Q + + D G+ N + +++Q +YPERLG L + P F
Sbjct: 137 LNLPHD--QSQMVWLIDFAGFSL-SNISLHVTKLTADVLQGHYPERLGVAILYNAPKFFE 193
Query: 198 AAWKIIYPFIDDNT--KKKFVFVADKDLHATLRDAIDDSNLAEDYGGK 243
+ WKI P ++ T K KFV+ + + + D + L +GGK
Sbjct: 194 SFWKIASPILEPKTFNKVKFVYPDRPETNKIMEDLFNMEELESAFGGK 241
>Os02g0321500 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 261
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 102/192 (53%), Gaps = 11/192 (5%)
Query: 22 KKVAELRAVVEAQDPACKE-----EDDYQLRRFLRARDHNIGKASAMLVKYLQWKREVKP 76
K V E++ +E + P +D+ + FL+ R ++ + + L K ++W+++ +
Sbjct: 44 KLVLEVKERLEREHPGLPTGRNGRDDEEMILWFLKDRKLSVDETVSKLTKAIKWRQDFQV 103
Query: 77 GGRAIADEEVRGELAQEKLYMQ-GYDRQGRPLVYGFGARHFPARRDLDEFKRYVVYVLDR 135
+++E V+G K Y+ +D GRP++ ++HFP+++D E ++ +++++
Sbjct: 104 S--ELSEESVKGLYQTGKAYVHDSFDIYGRPVLVVVASKHFPSKQDPVENEKLCAFLVEK 161
Query: 136 TCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYV 195
+RL G E + DL+G+ N D++ +++ YYP+RLG+V + P+V
Sbjct: 162 ALSRLPL--GTENILGIFDLRGFQV-ENGDLQFLKFLIDVFYYYYPKRLGQVLFVDAPFV 218
Query: 196 FMAAWKIIYPFI 207
F W+++ P +
Sbjct: 219 FQPMWQLVKPLL 230
>Os03g0219100 Phosphatidylinositol transfer protein-like, N-terminal domain
containing protein
Length = 438
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Query: 17 DVTEWKKVAELRAVVEAQDPACKEE----DDYQLRRFLRARDHNIGKASAMLVKYLQWKR 72
D E +K+ +R + Q P ++ +D + RFLRAR ++ KA+ L L W+
Sbjct: 7 DAKEREKIEAVRKTLRKQAPLTAKQAMYCNDACVERFLRARGESVKKAAKHLRTVLSWRD 66
Query: 73 EVKPGGRAIADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARRDLDEFKRYVVYV 132
+ G I +E ELA Y+ G+D + RP+V + +P F R +V+
Sbjct: 67 TI--GADHIIADEFSAELADGVAYVAGHDDEARPVVVFRIKQDYPKFHSQKSFVRLLVFT 124
Query: 133 LDRTCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHV 192
L+ + + Q F + D + + + + L+I+ +YYP RL R F+I
Sbjct: 125 LEVAVSCMSRFVDQ--FVLLFD-ASFFRSASAFLNLLMGTLKIVADYYPGRLHRAFVIDP 181
Query: 193 PYVFMAAWKIIYPFID 208
P +F WK + PF++
Sbjct: 182 PSLFSVLWKGVRPFVE 197
>AK107322
Length = 405
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 94/236 (39%), Gaps = 16/236 (6%)
Query: 16 GDVTEWKKVAELRAVVEAQDPACKEEDDYQLR----RFLRARDHNIGKASAMLVKYLQWK 71
V+ W+ + A Q P E + R R+LRA A L L W+
Sbjct: 103 AQVSSWETIPATTAKNAPQAPITDHERMWLTRECLLRYLRATKWVTANALRRLQSTLSWR 162
Query: 72 REVKPGGRAIADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARRDLDEFKRYVVY 131
RE G + + E K + GYD + RP ++ + + D ++ +
Sbjct: 163 REY--GADTFTYDYISPENESGKQVILGYDNEARPCLFLSPGKQ--NTKMSDRQIHHLCF 218
Query: 132 VLDRTCARLGGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIH 191
+LDR GQE A + D +G + A L I+QN+ PERLGR +
Sbjct: 219 MLDRVIDMTPP--GQETTALLIDFKGAAKGAVPSVEQARAVLNILQNHNPERLGRALITQ 276
Query: 192 VPYVFMAAWKIIYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAEDYGGKLKLV 247
+P+ +K+I FID TK K F D LR I L ++ G L V
Sbjct: 277 MPWYVSIFFKLISSFIDPVTKDKMKFNED------LRLWIPPQQLWNEFNGDLNFV 326
>Os05g0267800 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 283
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 9/228 (3%)
Query: 22 KKVAELR-AVVEAQDPACKEEDDYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGRA 80
KKV EL + + A+ P+ D +RRFLRAR+ + +A+ L + ++W+R+ +P
Sbjct: 29 KKVRELLGSQMTAEMPSFL--SDATIRRFLRARNWSTEQATKALKETVKWRRQYRPDTIR 86
Query: 81 IADEEVRGELAQEKLYMQGYDRQGRPLVYGFGARHFPARRDLDEFKRYVVYVLDRTCARL 140
D R A+ +D+ GR +V+ D+ K+ +VY L+ A
Sbjct: 87 WEDIPGREHEARRTYIADYFDKNGR-IVFISNPTIKSKSSTKDQIKQ-LVYNLE-IFAMH 143
Query: 141 GGNGGQEKFAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFMAAW 200
N E + D QGW N + I+QN+YP + L + P +F + W
Sbjct: 144 SENMEDECTVWLTDFQGW-VLTNTPLPLLRECTHIIQNHYPGLISVAILSNPPRIFESFW 202
Query: 201 KIIYPFIDDNTKK--KFVFVADKDLHATLRDAIDDSNLAEDYGGKLKL 246
KI+ FI+ K+ KFV+ + + H + D D L +GG+ L
Sbjct: 203 KIVCYFIEPKLKEKVKFVYTNNPESHKIVADMFDLDKLESAFGGRNTL 250
>Os02g0721800 Similar to Phosphatidylinositol transfer-like protein IV
Length = 612
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 22/260 (8%)
Query: 17 DVTEWKKVAELRAVVEAQDPACKEEDDYQ-LRRFLRARDHNIGKASAMLVKYLQWKREVK 75
D E + V+ R V+ A+D + DDY + RFL+AR ++ KA+ M L W+++
Sbjct: 76 DAEEEQAVSSFREVLFARDMLPERHDDYHTMLRFLKARKFDVEKAAHMWADMLHWRKDF- 134
Query: 76 PGGRAIADEEVRGELAQE-KLYMQGY---DRQGRPLVYGFGARHFPARR-DLDEFKRYVV 130
G I ++ EL + + Y GY D++GRP+ + P++ + +RY+
Sbjct: 135 -GTDTILEDFEFHELEEVLQYYPHGYHGVDKEGRPVYIELLGKVEPSKLVQITTVERYIK 193
Query: 131 YVLDR---------TCARLGGNGGQEKFAAVADLQGWGYYGNCDI-RAYVAALE-IMQNY 179
Y + + + + D+ G G+ I R V ++ I +Y
Sbjct: 194 YHVQEFERAFREKFPACSIAAKKHIDTTTTILDVHGVGWKNFSKIARDLVRCMQKIDGDY 253
Query: 180 YPERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKKFVFVADKDLHATLRDAIDDSNLAED 239
YPE L ++F+++ F W + +D T K + K H L +AID S L E
Sbjct: 254 YPETLHQMFIVNAGPGFKLIWSTVKGLLDPKTSSKIHVLGTKYQHRLL-EAIDSSQLPEF 312
Query: 240 YGGKLKLVSPLINGATESNR 259
GG S G SN+
Sbjct: 313 LGGSCTCSSQ--GGCLRSNK 330
>Os01g0874700 emp24/gp25L/p24 family protein
Length = 613
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 13/217 (5%)
Query: 40 EEDDYQLRRFLRARDHNIGKASAMLVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQG 99
E D L +FLRAR+ + +A AML + W++ G ++ D ++ ++ +G
Sbjct: 282 ERTDTVLLKFLRAREFKVKEAMAMLRSAVLWRKRF--GIESLLDADLALPELDSVVFYRG 339
Query: 100 YDRQGRPLVYG-FGA--------RHFPARRDLDEFKRYVVYVLDR-TCARLG-GNGGQEK 148
DR+G P+ Y +G + F + F ++ + +L+R ++L G
Sbjct: 340 ADREGHPVCYNVYGEFQDKDLYEKAFGDEEKRERFLKWRIQLLERGILSQLDFSPSGICS 399
Query: 149 FAAVADLQGWGYYGNCDIRAYVAALEIMQNYYPERLGRVFLIHVPYVFMAAWKIIYPFID 208
V DL+ A+ ++Q+ YPE + + I+VP+ ++AA K++ PF+
Sbjct: 400 MVQVTDLKNSPPMLGKHRAVTRQAVALLQDNYPEFIAKKVFINVPWWYLAANKMMSPFLT 459
Query: 209 DNTKKKFVFVADKDLHATLRDAIDDSNLAEDYGGKLK 245
TK KF+F + TL I + +GG K
Sbjct: 460 QRTKSKFIFASPAKSAETLFRYIAPEQVPVQFGGLFK 496
>Os05g0545000 Similar to Phosphatidylinositol transfer-like protein IV
Length = 613
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 19/257 (7%)
Query: 5 KQQERDGHRDDGDVTEWKKVAELRAVVEAQDPACKEEDDYQ-LRRFLRARDHNIGKASAM 63
K + R D DV + + V R + +D ++ DDY + RFL+AR ++ KA +M
Sbjct: 65 KNEPRGSIEDIRDVQDLQAVDAFRQCLVDEDLLPQQHDDYHTMLRFLKARKFDVEKAKSM 124
Query: 64 LVKYLQWKREVKPGGRAIADEEVRGELAQEKLYMQ---GYDRQGRP----LVYGFGARHF 116
L+W++E G I + + K Y Q G D++GRP L+ A
Sbjct: 125 WSDMLKWRKEF--GADNIEEFDYTEADEVMKYYPQFYHGVDKEGRPIYIELIGKVDANKL 182
Query: 117 PARRDLDEFKRYVVYVLDRT------CARLGGNGGQEKFAAVADLQGWGYYG-NCDIRAY 169
++ + +Y V +R + + + D+QG G + R
Sbjct: 183 MQVTTIERYVKYHVKEFERCFQMRFPACSIAAKRPIDSSTTILDVQGVGLKNFSKAARDL 242
Query: 170 VAALEIMQN-YYPERLGRVFLIHVPYVFMAAWKIIYPFIDDNTKKKFVFVADKDLHATLR 228
+ L+ + N YPE L R+++I+ F W + F+D T K + K L
Sbjct: 243 ITRLQKIDNDNYPETLRRMYIINAGQGFKMLWSTVKSFLDPKTASKIHVLGSK-YQNKLL 301
Query: 229 DAIDDSNLAEDYGGKLK 245
+ ID++ L E +GGK K
Sbjct: 302 EIIDENELPEFFGGKCK 318
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,938,466
Number of extensions: 444726
Number of successful extensions: 976
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 13
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)