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Os06g0671800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.12 (0.0461) R2 : 0.539
β1 : -1.44 (0.172) R2dD : 0.0755 R2D : 0.0971
β2 : 1.51 (0.162) R2dC : 0.164 R2C : 0.334
β3 : -1.21 (0.169) R2dE : 0.101 R2E : 0.294
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.19 (0.0983) R2dN8 : 0.0051 R2N8 : -0.00159
σ : 0.86
deviance : 340.62
__
_____
C
peak time of C : 18.2
E
wheather : temperature
threshold : 18.3
memory length : 254
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.4
open length of G : 19.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
311.55 0.829 7.13 -1.62 1.42 -1.1 6.13 4.25 -0.276 18.2 15.07 291 17.8 18.1
325.18 0.84 7.12 -1.48 1.55 -1.15 2.62 -- -0.246 18.6 18.04 277 17.3 18.2
347.28 0.875 7.11 -1.47 1.9 -0.686 -- 0.667 -0.168 17.9 19.01 105 19 19.4
340.62 0.86 7.12 -1.44 1.51 -1.21 -- -- -0.19 18.2 18.3 254 17.4 19.1
391.57 0.922 7.09 -1.39 -- -1.79 -- -0.325 -0.228 -- 18.27 76 20.2 17.1
362.05 0.892 7.15 -1.66 2.3 -- 2.71 -- -0.23 18.1 -- -- -- --
380.08 0.913 7.14 -1.69 2.31 -- -- -- -0.22 18.1 -- -- -- --
391.6 0.922 7.07 -1.37 -- -1.78 -- -- -0.194 -- 18.29 82 20.2 17.1
384.49 0.913 7.03 -- 1.55 -2.14 -- -- 0.00289 17.9 18.2 254 16.6 21.7
656.6 1.2 7.1 -1.75 -- -- -- -- -0.272 -- -- -- -- --
455.22 0.998 7.1 -- 2.33 -- -- -- -0.0317 18 -- -- -- --
403.66 0.936 7.02 -- -- -2.44 -- -- 0.0106 -- 18.09 424 18.1 16.1
737.84 1.27 7.06 -- -- -- -- -- -0.0772 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.83 temperature 15.0 270 > th dose independent rect. 18 18
3 316.00 temperature 10.0 90 > th dose dependent rect. 19 17
5 316.57 temperature 20.0 10 > th dose independent rect. 20 16
6 316.57 temperature 10.0 270 > th dose dependent rect. 17 19
11 317.57 temperature 10.0 10 > th dose dependent rect. 20 16
48 321.44 temperature 15.0 270 > th dose independent rect. 8 15
51 321.63 humidity 80.0 43200 > th dose independent rect. 4 9
73 322.84 humidity 80.0 43200 > th dose independent rect. 3 11
77 323.24 humidity 80.0 43200 < th dose independent rect. 3 11
90 323.97 humidity 80.0 43200 < th dose independent rect. 2 13
99 324.30 humidity 80.0 43200 > th dose independent rect. 2 13
100 324.37 humidity 70.0 43200 > th dose dependent rect. 2 10
108 324.54 temperature 20.0 270 > th dose independent rect. 17 7
109 324.58 wind 5.0 14400 < th dose independent rect. 11 1
110 324.60 wind 5.0 14400 > th dose independent rect. 11 1
116 324.90 humidity 80.0 43200 < th dose independent rect. 4 9
127 325.33 wind 1.0 43200 > th dose independent rect. 15 7
128 325.40 humidity 80.0 43200 > th dose independent rect. 5 7
129 325.41 temperature 15.0 270 > th dose dependent rect. 18 6
135 325.70 humidity 70.0 43200 > th dose dependent sin 5 NA
136 325.77 humidity 80.0 43200 < th dose independent sin 3 NA
139 325.86 wind 1.0 43200 < th dose dependent rect. 13 8
140 325.91 humidity 80.0 43200 > th dose independent rect. 1 15
141 325.93 wind 1.0 43200 < th dose independent rect. 14 7
145 325.98 humidity 80.0 43200 > th dose independent sin 3 NA
147 326.00 wind 1.0 43200 > th dose independent rect. 13 10
151 326.02 atmosphere 1010.0 270 < th dose independent rect. 17 6
165 326.43 humidity 70.0 43200 > th dose dependent rect. 18 21
236 327.34 wind 3.0 43200 < th dose dependent rect. 17 1
247 327.49 wind 1.0 43200 < th dose independent rect. 13 10
253 327.59 humidity 80.0 43200 > th dose independent rect. 24 17
280 327.90 wind 5.0 14400 > th dose independent rect. 23 15
288 327.98 humidity 70.0 43200 > th dose dependent no NA NA
292 328.02 humidity 70.0 43200 > th dose dependent rect. 6 23
309 328.13 wind 9.0 43200 < th dose independent rect. 18 18
321 328.28 wind 5.0 14400 < th dose independent rect. 23 15
324 328.30 wind 9.0 43200 > th dose independent rect. 18 18
331 328.35 humidity 70.0 43200 > th dose dependent rect. 2 23
337 328.41 humidity 70.0 43200 > th dose dependent rect. 23 23
342 328.49 atmosphere 1010.0 90 < th dose independent rect. 19 17
348 328.51 wind 1.0 43200 > th dose independent rect. 17 1
360 328.62 humidity 80.0 43200 > th dose independent rect. 23 22
363 328.64 wind 3.0 43200 > th dose dependent rect. 20 7
366 328.66 humidity 90.0 90 < th dose independent rect. 19 17
368 328.68 wind 9.0 43200 > th dose independent sin 10 NA
374 328.75 atmosphere 1015.0 10 < th dose dependent rect. 20 16
398 328.90 wind 7.0 43200 > th dose dependent rect. 18 18
400 328.92 wind 9.0 43200 < th dose independent sin 10 NA
403 328.94 temperature 15.0 4320 > th dose independent rect. 6 3
408 328.97 wind 7.0 14400 > th dose independent rect. 7 3
414 329.02 radiation 30.0 4320 < th dose independent rect. 24 7
415 329.02 wind 9.0 43200 > th dose dependent rect. 14 19
440 329.27 wind 9.0 43200 > th dose dependent rect. 14 23
443 329.31 wind 1.0 43200 < th dose dependent rect. 15 3
446 329.33 wind 3.0 43200 > th dose dependent rect. 21 4
472 329.54 humidity 50.0 90 > th dose dependent rect. 23 19
479 329.59 wind 7.0 14400 < th dose independent rect. 6 4
484 329.64 temperature 15.0 90 > th dose dependent sin 8 NA
510 329.83 humidity 80.0 43200 < th dose independent rect. 23 22
511 329.83 radiation 1.0 1440 < th dose dependent rect. 8 16
525 329.92 radiation 1.0 1440 < th dose dependent rect. 8 18
526 329.93 radiation 1.0 1440 < th dose dependent rect. 8 12
538 329.99 wind 9.0 43200 > th dose dependent sin 11 NA
542 330.01 wind 5.0 43200 > th dose dependent rect. 23 16
544 330.04 wind 7.0 43200 > th dose dependent sin 7 NA
546 330.05 precipitation 0.1 1440 < th dose independent rect. 10 3
548 330.05 precipitation 0.1 1440 < th dose dependent rect. 10 3
554 330.09 wind 7.0 43200 < th dose independent rect. 21 18
565 330.14 wind 1.0 43200 < th dose independent rect. 17 1
593 330.28 wind 7.0 43200 > th dose dependent sin 9 NA
605 330.31 humidity 70.0 43200 > th dose dependent sin 15 NA
606 330.32 temperature 15.0 10 > th dose dependent rect. 20 7
637 330.49 temperature 20.0 270 > th dose independent rect. 8 20
647 330.57 temperature 15.0 4320 < th dose independent rect. 4 2
665 330.67 wind 5.0 43200 < th dose independent rect. 20 6
686 330.75 wind 7.0 43200 < th dose independent sin 5 NA
717 330.82 wind 5.0 14400 > th dose dependent rect. 23 13
734 330.88 wind 3.0 43200 > th dose dependent rect. 23 2
738 330.89 wind 7.0 43200 > th dose independent sin 5 NA
739 330.89 wind 9.0 4320 < th dose independent rect. 9 1
747 330.91 temperature 15.0 1440 < th dose dependent rect. 4 3
751 330.92 humidity 70.0 43200 > th dose dependent rect. 13 16
752 330.93 wind 5.0 43200 < th dose independent rect. 19 8
753 330.93 humidity 70.0 43200 > th dose dependent rect. 14 14
771 330.97 humidity 80.0 43200 > th dose independent rect. 4 21
785 331.00 wind 7.0 14400 > th dose dependent rect. 7 3
797 331.05 temperature 15.0 1440 > th dose independent rect. 6 11
829 331.13 atmosphere 1010.0 270 < th dose independent rect. 19 2
833 331.14 wind 5.0 43200 > th dose independent rect. 20 6
846 331.19 humidity 80.0 1440 > th dose independent rect. 19 1
849 331.20 temperature 20.0 720 > th dose independent rect. 9 8
855 331.21 wind 5.0 43200 > th dose independent rect. 19 8
906 331.38 wind 7.0 43200 > th dose dependent rect. 6 6
927 331.44 temperature 30.0 270 < th dose independent rect. 17 19
930 331.45 wind 9.0 43200 < th dose independent rect. 14 22
966 331.55 temperature 15.0 1440 > th dose independent rect. 21 3
968 331.55 wind 9.0 43200 > th dose independent rect. 14 21
970 331.55 atmosphere 995.0 43200 < th dose dependent rect. 5 19