FiT-DB / Search/ Help/ Sample detail

Os01g0264700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0159) R2 : 0.016
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0914 (0.0335) R2dN8 : 0.0207 R2N8 : 0.016
σ : 0.3
deviance : 41.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.78 0.252 11 0.48 0.283 0.487 0.0651 1.1 0.0801 12.3 1.532 5802 -- --
30.95 0.259 11 0.432 0.29 0.394 -0.0517 -- 0.0653 11.7 2.328 7692 -- --
28.79 0.25 11 0.482 0.278 0.491 -- 1.12 0.0787 12.3 1.53 5812 -- --
30.11 0.256 11 0.352 0.284 0.477 -- -- 0.015 9.84 2.499 7760 -- --
31.28 0.26 11 0.499 -- 0.583 -- 1.08 0.0843 -- 1.96 6017 -- --
33.3 0.271 11 0.326 0.29 -- 0.0795 -- 0.131 12.1 -- -- -- --
33.32 0.27 11 0.329 0.289 -- -- -- 0.131 12.1 -- -- -- --
32.34 0.266 11 0.326 -- 0.236 -- -- 0.114 -- 2.499 7760 -- --
30.48 0.257 11 -- 0.256 0.438 -- -- 0.035 9.73 1.314 39419 -- --
38.59 0.29 11 0.32 -- -- -- -- 0.127 -- -- -- -- --
36.18 0.281 11 -- 0.285 -- -- -- 0.0944 12.1 -- -- -- --
33.62 0.27 11 -- -- 0.497 -- -- -0.0571 -- 1.263 30614 -- --
41.29 0.3 11 -- -- -- -- -- 0.0914 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.83 temperature 25.0 14400 > th dose dependent rect. 23 1
2 27.88 atmosphere 1005.0 14400 < th dose independent rect. 17 1
3 27.92 atmosphere 1005.0 14400 > th dose independent rect. 17 1
5 27.92 radiation 40.0 1440 < th dose independent rect. 1 8
7 27.95 atmosphere 1005.0 43200 > th dose independent rect. 14 2
9 27.95 radiation 40.0 1440 < th dose independent rect. 17 16
10 27.95 humidity 80.0 43200 > th dose dependent rect. 9 2
13 27.97 radiation 40.0 1440 < th dose independent rect. 3 6
15 27.99 humidity 80.0 43200 > th dose independent rect. 10 1
20 28.01 wind 9.0 43200 < th dose independent rect. 18 1
27 28.03 wind 9.0 43200 > th dose independent rect. 18 1
33 28.04 wind 9.0 43200 > th dose dependent rect. 18 1
42 28.07 atmosphere 1005.0 43200 < th dose independent rect. 13 4
47 28.09 humidity 80.0 43200 < th dose independent rect. 10 2
52 28.10 humidity 80.0 43200 > th dose independent rect. 10 6
53 28.10 atmosphere 1005.0 43200 < th dose independent rect. 13 6
68 28.13 atmosphere 1005.0 43200 < th dose independent rect. 14 1
70 28.13 radiation 40.0 1440 < th dose independent rect. 7 2
75 28.14 radiation 10.0 43200 > th dose independent rect. 5 1
76 28.14 humidity 80.0 43200 > th dose independent rect. 13 2
100 28.14 humidity 80.0 43200 > th dose dependent rect. 9 6
110 28.16 temperature 25.0 14400 > th dose independent rect. 2 1
135 28.18 humidity 80.0 43200 < th dose independent rect. 14 1
136 28.18 wind 3.0 43200 < th dose dependent rect. 3 1
139 28.18 temperature 25.0 14400 > th dose dependent rect. 23 4
147 28.19 humidity 80.0 43200 < th dose independent rect. 10 6
161 28.21 radiation 40.0 1440 > th dose independent rect. 8 1
184 28.22 humidity 90.0 43200 > th dose independent rect. 7 3
195 28.22 radiation 40.0 1440 < th dose independent rect. 22 11
196 28.22 precipitation 0.1 43200 > th dose dependent rect. 5 1
204 28.23 wind 1.0 43200 > th dose dependent rect. 3 1
216 28.26 temperature 25.0 14400 < th dose independent rect. 2 1
225 28.27 humidity 90.0 43200 > th dose independent rect. 7 1
229 28.27 humidity 90.0 43200 < th dose independent rect. 8 2
268 28.29 precipitation 0.1 43200 > th dose independent rect. 5 1
279 28.30 temperature 30.0 14400 < th dose independent rect. 17 1
310 28.32 precipitation 0.1 43200 > th dose dependent rect. 13 1
318 28.32 radiation 40.0 4320 > th dose dependent rect. 13 21
319 28.33 temperature 30.0 14400 > th dose independent rect. 17 1
324 28.33 temperature 25.0 14400 > th dose dependent rect. 2 1
338 28.35 precipitation 0.1 43200 < th dose independent rect. 5 1
339 28.35 precipitation 0.1 43200 < th dose independent rect. 13 1
347 28.35 precipitation 0.1 43200 < th dose dependent rect. 5 1
348 28.35 precipitation 0.1 43200 < th dose dependent rect. 13 1
360 28.37 atmosphere 1005.0 43200 > th dose independent sin 19 NA
372 28.37 temperature 25.0 14400 > th dose independent rect. 23 10
390 28.38 precipitation 0.1 43200 > th dose dependent rect. 13 4
406 28.39 temperature 25.0 14400 < th dose independent rect. 24 8
437 28.41 precipitation 0.1 43200 < th dose independent rect. 15 2
444 28.41 atmosphere 1005.0 43200 > th dose dependent rect. 24 1
448 28.41 precipitation 0.1 43200 < th dose dependent rect. 15 2
451 28.42 precipitation 0.1 43200 > th dose independent rect. 15 2
453 28.42 precipitation 0.1 43200 < th dose independent rect. 13 4
463 28.42 precipitation 0.1 43200 < th dose dependent rect. 13 4
471 28.43 precipitation 0.1 43200 > th dose independent rect. 13 4
494 28.44 precipitation 0.1 43200 > th dose independent rect. 13 1
502 28.44 temperature 30.0 14400 < th dose independent rect. 11 7
516 28.44 precipitation 0.1 43200 > th dose dependent rect. 15 2
523 28.45 temperature 30.0 14400 < th dose independent rect. 12 1
526 28.45 temperature 30.0 14400 > th dose independent rect. 12 6
541 28.45 humidity 80.0 1440 > th dose dependent rect. 6 1
552 28.46 temperature 30.0 14400 > th dose independent rect. 12 1
646 28.48 temperature 30.0 14400 < th dose independent rect. 11 4
676 28.48 humidity 80.0 43200 > th dose dependent rect. 16 1
696 28.49 wind 1.0 43200 > th dose independent rect. 3 1
727 28.50 temperature 30.0 14400 > th dose independent sin 15 NA
728 28.50 temperature 30.0 14400 < th dose independent sin 14 NA
809 28.51 temperature 30.0 14400 < th dose independent rect. 16 14
817 28.51 temperature 30.0 14400 < th dose independent rect. 16 16
825 28.51 atmosphere 1005.0 43200 > th dose dependent sin 10 NA
829 28.51 atmosphere 1005.0 43200 > th dose dependent rect. 19 1
920 28.53 atmosphere 1005.0 43200 < th dose independent sin 18 NA
990 28.54 radiation 40.0 4320 > th dose dependent sin 12 NA