Os03g0724100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.
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Os03g0724100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.27 | 0.313 | 11.1 | -1.9 | 0.642 | 0.936 | 0.192 | -2.9 | -0.0172 | 5.45 | 25.06 | 4211 | -- | -- |
| 44.26 | 0.31 | 11 | -1.35 | 0.654 | 0.684 | 0.215 | -- | -0.106 | 5.35 | 22.51 | 10693 | -- | -- |
| 44.35 | 0.31 | 11.1 | -1.95 | 0.639 | 0.978 | -- | -3.23 | -0.0109 | 5.46 | 25.44 | 4198 | -- | -- |
| 44.36 | 0.31 | 11 | -1.35 | 0.654 | 0.688 | -- | -- | -0.111 | 5.41 | 22.6 | 10740 | -- | -- |
| 65.57 | 0.377 | 11.1 | -1.94 | -- | 0.906 | -- | -2.58 | -0.0765 | -- | 23.54 | 4180 | -- | -- |
| 59.02 | 0.36 | 11 | -1 | 0.666 | -- | 0.285 | -- | 0.159 | 5.1 | -- | -- | -- | -- |
| 59.21 | 0.36 | 11 | -1 | 0.668 | -- | -- | -- | 0.158 | 5.18 | -- | -- | -- | -- |
| 65.25 | 0.376 | 11 | -1.31 | -- | 0.706 | -- | -- | -0.102 | -- | 23.76 | 9928 | -- | -- |
| 79.83 | 0.416 | 11 | -- | 0.621 | 0.366 | -- | -- | 0.19 | 5.53 | 28.4 | 8374 | -- | -- |
| 82.57 | 0.425 | 11 | -0.979 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 85.72 | 0.433 | 10.9 | -- | 0.651 | -- | -- | -- | 0.27 | 5.24 | -- | -- | -- | -- |
| 100 | 0.466 | 11 | -- | -- | 0.407 | -- | -- | 0.167 | -- | 28.72 | 8444 | -- | -- |
| 107.87 | 0.485 | 10.9 | -- | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.99 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 2 | 39.00 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 4 | 39.03 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 5 | 39.05 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 8 | 39.10 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 10 | 39.11 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 12 | 39.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 16 | 39.16 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 18 | 39.17 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 23 | 39.19 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 14 |
| 34 | 39.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 46 | 39.30 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 70 | 39.38 | wind | 1 | 43200 | > th | dose dependent | sin | 5 | NA |
| 95 | 39.45 | wind | 9 | 43200 | < th | dose dependent | sin | 5 | NA |
| 141 | 39.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 146 | 39.60 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 186 | 39.70 | wind | 3 | 43200 | > th | dose independent | sin | 6 | NA |
| 197 | 39.72 | wind | 3 | 43200 | < th | dose independent | sin | 6 | NA |
| 219 | 39.78 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 230 | 39.80 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 305 | 39.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 4 |
| 380 | 40.12 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 381 | 40.12 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 421 | 40.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 447 | 40.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 18 |
| 465 | 40.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 7 |
| 471 | 40.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 475 | 40.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 510 | 40.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 527 | 40.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 593 | 40.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 596 | 40.41 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 600 | 40.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 749 | 40.59 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 797 | 40.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 814 | 40.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 826 | 40.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 847 | 40.69 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 873 | 40.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 947 | 40.83 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 971 | 40.86 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 972 | 40.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 988 | 40.88 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 993 | 40.89 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 11 |