Os02g0752000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde-binding/triple function, N-terminal domain containing protein.
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Os02g0752000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde-binding/triple function, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.56 | 0.255 | 10.4 | -0.781 | 0.883 | 0.387 | -0.251 | 0.457 | -0.0227 | 17.9 | 58.46 | 2060 | -- | -- |
| 29.82 | 0.254 | 10.4 | -0.77 | 0.877 | 0.404 | -0.297 | -- | -0.0277 | 17.9 | 57.72 | 2050 | -- | -- |
| 29.67 | 0.254 | 10.4 | -0.789 | 0.877 | 0.404 | -- | 0.572 | -0.0206 | 17.8 | 57.96 | 2092 | -- | -- |
| 30.03 | 0.255 | 10.4 | -0.765 | 0.877 | 0.411 | -- | -- | -0.0292 | 17.9 | 57.65 | 2052 | -- | -- |
| 65.1 | 0.376 | 10.4 | -0.792 | -- | 0.496 | -- | 0.751 | -0.0575 | -- | 55 | 2731 | -- | -- |
| 34.82 | 0.277 | 10.4 | -0.844 | 0.848 | -- | -0.357 | -- | 0.0688 | 17.7 | -- | -- | -- | -- |
| 35.14 | 0.278 | 10.4 | -0.842 | 0.846 | -- | -- | -- | 0.0674 | 17.7 | -- | -- | -- | -- |
| 65.63 | 0.377 | 10.4 | -0.773 | -- | 0.55 | -- | -- | -0.0741 | -- | 56.01 | 2717 | -- | -- |
| 44.65 | 0.311 | 10.4 | -- | 0.89 | 0.503 | -- | -- | 0.0294 | 17.9 | 56.04 | 2020 | -- | -- |
| 72.24 | 0.397 | 10.4 | -0.868 | -- | -- | -- | -- | 0.0472 | -- | -- | -- | -- | -- |
| 53.8 | 0.343 | 10.4 | -- | 0.859 | -- | -- | -- | 0.161 | 17.7 | -- | -- | -- | -- |
| 78.97 | 0.414 | 10.4 | -- | -- | 0.701 | -- | -- | 0.0244 | -- | 52.95 | 2771 | -- | -- |
| 92.13 | 0.448 | 10.4 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.61 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 2 | 26.75 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 4 | 26.86 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 6 | 26.88 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 7 | 26.89 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 16 | 19 |
| 9 | 26.92 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 15 | 27.04 | temperature | 2e+01 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 16 | 27.05 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 17 | 27.08 | temperature | 2e+01 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 18 | 27.09 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 17 | 16 |
| 19 | 27.12 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 25 | 27.19 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 37 | 27.23 | wind | 9e+00 | 14400 | > th | dose dependent | sin | 10 | NA |
| 45 | 27.26 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 46 | 27.26 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 47 | 27.27 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 52 | 27.29 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 56 | 27.30 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 81 | 27.36 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 82 | 27.37 | radiation | 1e+00 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 90 | 27.39 | wind | 9e+00 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 92 | 27.39 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 93 | 27.39 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 125 | 27.46 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 127 | 27.46 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 16 | 9 |
| 142 | 27.48 | wind | 7e+00 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 148 | 27.49 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 159 | 27.50 | wind | 9e+00 | 14400 | > th | dose independent | sin | 11 | NA |
| 176 | 27.51 | wind | 5e+00 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 177 | 27.51 | wind | 5e+00 | 14400 | > th | dose dependent | sin | 11 | NA |
| 216 | 27.56 | wind | 9e+00 | 14400 | < th | dose independent | sin | 11 | NA |
| 227 | 27.58 | wind | 9e+00 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 337 | 27.70 | humidity | 9e+01 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 498 | 27.96 | humidity | 9e+01 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 554 | 28.03 | humidity | 9e+01 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 574 | 28.06 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 4 | 14 |
| 602 | 28.11 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 634 | 28.18 | wind | 5e+00 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 657 | 28.23 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 6 | 12 |
| 662 | 28.25 | humidity | 9e+01 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 668 | 28.26 | wind | 5e+00 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 670 | 28.26 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 674 | 28.26 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 6 | 12 |
| 703 | 28.31 | precipitation | 1e-01 | 4320 | > th | dose dependent | rect. | 2 | 16 |
| 771 | 28.40 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 780 | 28.41 | wind | 5e+00 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 803 | 28.45 | precipitation | 1e-01 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 820 | 28.47 | wind | 7e+00 | 14400 | < th | dose independent | rect. | 12 | 21 |
| 828 | 28.48 | radiation | 4e+01 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 850 | 28.52 | humidity | 9e+01 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 879 | 28.56 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 886 | 28.57 | atmosphere | 1e+03 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 899 | 28.58 | atmosphere | 1e+03 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 904 | 28.58 | precipitation | 1e-01 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 909 | 28.58 | precipitation | 1e-01 | 4320 | < th | dose dependent | rect. | 14 | 4 |
| 936 | 28.62 | precipitation | 1e-01 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 948 | 28.63 | precipitation | 1e-01 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 950 | 28.63 | humidity | 9e+01 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 957 | 28.63 | precipitation | 1e-01 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 962 | 28.64 | precipitation | 1e-01 | 4320 | > th | dose independent | rect. | 12 | 6 |
| 971 | 28.65 | wind | 7e+00 | 14400 | > th | dose independent | rect. | 12 | 21 |