BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0791200 Os02g0791200|AK120632
(531 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0791200 Zinc finger, RING-type domain containing protein 1089 0.0
Os08g0258200 Zinc finger, RING-type domain containing protein 601 e-172
Os10g0521600 Similar to Ankyrin-1 (Erythrocyte ankyrin) 258 7e-69
Os04g0351300 163 3e-40
Os01g0974400 Zinc finger, RING-type domain containing protein 129 6e-30
Os05g0112000 Zinc finger, RING-type domain containing protein 128 1e-29
Os12g0599900 Tetratricopeptide region domain containing pro... 89 1e-17
Os02g0184000 Zinc finger, DHHC-type domain containing protein 75 1e-13
Os08g0542700 Ankyrin repeat containing protein 74 2e-13
Os06g0128700 Zinc finger, RING-type domain containing protein 72 1e-12
Os12g0600100 Tetratricopeptide-like helical domain containi... 69 8e-12
>Os02g0791200 Zinc finger, RING-type domain containing protein
Length = 531
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/531 (100%), Positives = 531/531 (100%)
Query: 1 MRFGRPRGLGNFRVKSSIRGLPVHAKRGDPQLRASMGFLSLVGNSFGCSASGERLVSAAR 60
MRFGRPRGLGNFRVKSSIRGLPVHAKRGDPQLRASMGFLSLVGNSFGCSASGERLVSAAR
Sbjct: 1 MRFGRPRGLGNFRVKSSIRGLPVHAKRGDPQLRASMGFLSLVGNSFGCSASGERLVSAAR 60
Query: 61 DGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEIVSLLLESGVEINLRNYRGQ 120
DGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEIVSLLLESGVEINLRNYRGQ
Sbjct: 61 DGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEIVSLLLESGVEINLRNYRGQ 120
Query: 121 TALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRLVLADYVPSM 180
TALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRLVLADYVPSM
Sbjct: 121 TALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRLVLADYVPSM 180
Query: 181 PNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGA 240
PNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGA
Sbjct: 181 PNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGA 240
Query: 241 SVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVAR 300
SVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVAR
Sbjct: 241 SVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVAR 300
Query: 301 SWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSIMSIAREFGWRYLNQSPVCIDPCAVCL 360
SWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSIMSIAREFGWRYLNQSPVCIDPCAVCL
Sbjct: 301 SWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSIMSIAREFGWRYLNQSPVCIDPCAVCL 360
Query: 361 EGSCSVAAEGCKHEFCTRCALYLCSTSYTSVSPAGAIPCPLCRHPIIAFTALPGTSPIRE 420
EGSCSVAAEGCKHEFCTRCALYLCSTSYTSVSPAGAIPCPLCRHPIIAFTALPGTSPIRE
Sbjct: 361 EGSCSVAAEGCKHEFCTRCALYLCSTSYTSVSPAGAIPCPLCRHPIIAFTALPGTSPIRE 420
Query: 421 LPRNSLSLSFCTTCPAVNSDSTPSIASHLYRTEFQCARMPPMGSSSFRSLSCQRLPAMKL 480
LPRNSLSLSFCTTCPAVNSDSTPSIASHLYRTEFQCARMPPMGSSSFRSLSCQRLPAMKL
Sbjct: 421 LPRNSLSLSFCTTCPAVNSDSTPSIASHLYRTEFQCARMPPMGSSSFRSLSCQRLPAMKL 480
Query: 481 NPSFCMGAMDTNPCLIRCSRFGPSFRRSASQGESSRRAWPLTFDPIAATGS 531
NPSFCMGAMDTNPCLIRCSRFGPSFRRSASQGESSRRAWPLTFDPIAATGS
Sbjct: 481 NPSFCMGAMDTNPCLIRCSRFGPSFRRSASQGESSRRAWPLTFDPIAATGS 531
>Os08g0258200 Zinc finger, RING-type domain containing protein
Length = 495
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/495 (60%), Positives = 371/495 (74%), Gaps = 18/495 (3%)
Query: 36 MGFLSLVGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAA 95
MG L +VG+SFGCSA+GERLVSAARDGD+QEA ALLE NPRLARYSTFG RNSPLHY+AA
Sbjct: 1 MGLLGMVGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAA 60
Query: 96 QGHHEIVSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGS 155
+GHHEIVSLL+ESGV+INLRN RGQTALMQAC YGHW+VVQ L+LF AN+H+ D +G +
Sbjct: 61 KGHHEIVSLLIESGVDINLRNCRGQTALMQACLYGHWKVVQILVLFKANIHKKDCFSGAT 120
Query: 156 ALHFAALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADG 215
A+HFAAL GH RCLRL++ADYVPS+P FW+ M ++E D L +++N K+DG
Sbjct: 121 AIHFAALKGHTRCLRLLVADYVPSLPEFWSVMHAKCTDETNKEAFDAVALRRLINNKSDG 180
Query: 216 GLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCC 275
G+TPLH+AAL+GH ECVQLLLDLGASV E TI DG+TIDLIG+GSTPLHYAACGG+AVCC
Sbjct: 181 GVTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCC 240
Query: 276 QLLIARGASLSAQNASGWTPLMVARSWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSIM 335
QLL+A GA++ AQN +G TPLMVARSWH++S+E IL+K E +R +PS YL LPLMSI+
Sbjct: 241 QLLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSEVPVRILPSSYLSLPLMSIV 300
Query: 336 SIAREFGWRYLNQSPVCIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTSVS--- 392
IARE GWR + S VC DPCA+CL+ C+V+AEGC HEFCT+CALYLC+T+ +S S
Sbjct: 301 KIARECGWRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIRG 360
Query: 393 PAGAIPCPLCRHPIIAFTALPGTSPIRELPRNSLSLSFCTTCPAVNSDST--PSIASHLY 450
G+IPCPLCRH I++F L T+PI+ELP + SL+ C + S +I S Y
Sbjct: 361 VPGSIPCPLCRHTIVSFVRLTSTTPIKELPWTNKSLALCAAGASTGSKYAGPAAITSSKY 420
Query: 451 ------RTEFQCARMP--PMGSSSFRSLSCQRLPAMKLNPSFCMGAMDTNPCLIRCSRFG 502
R+E + R +G SSFR+ S +L ++KLN C GA +T PCL+ C F
Sbjct: 421 AGSLHRRSEMRSLRSSSVDLGCSSFRTASSGKLSSIKLN---CTGADETMPCLVNC--FR 475
Query: 503 PSFRRSASQGESSRR 517
P +RS+S E RR
Sbjct: 476 PDVQRSSSYRERIRR 490
>Os10g0521600 Similar to Ankyrin-1 (Erythrocyte ankyrin)
Length = 242
Score = 258 bits (659), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 137/227 (60%), Positives = 168/227 (74%), Gaps = 11/227 (4%)
Query: 42 VGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEI 101
+GNS GCSASGERLVSAARDGD EAR LLE +P LARYSTFGG NSPLH+AAA+GH +I
Sbjct: 1 MGNSLGCSASGERLVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLDI 60
Query: 102 VSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAA 161
V+LLLE G ++N+RNY GQTALM AC++GHWEVVQ L+LF NV R DYL+G +ALHFAA
Sbjct: 61 VTLLLEKGADVNVRNYCGQTALMHACRHGHWEVVQMLLLFRCNVTRADYLSGRTALHFAA 120
Query: 162 LHGHARCLRLVLADYVPSMP--NFWNSMKD-----SLSEEGPSADL----DEDGLFKMVN 210
G RC+RL+LAD+VPS P + +S D + S P + L +E + +N
Sbjct: 121 HDGLVRCVRLLLADFVPSAPLEDGASSTVDGGECQTNSGSSPCSSLGLKFNESARLRYIN 180
Query: 211 QKADGGLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIG 257
+ ADGG+T LHMAALNGH +C+QLL+DLGA+V T GTT +LIG
Sbjct: 181 KPADGGVTALHMAALNGHFDCMQLLIDLGANVSAVTFPYGTTANLIG 227
>Os04g0351300
Length = 122
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/89 (91%), Positives = 83/89 (93%)
Query: 36 MGFLSLVGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAA 95
MGFL+LVGNS GCSASGERLVSA RDGDLQEARALLEYNPRLA YSTFGGRNSPLHYAAA
Sbjct: 1 MGFLNLVGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAA 60
Query: 96 QGHHEIVSLLLESGVEINLRNYRGQTALM 124
QGHHEIVSLLLES VEINLRNYRGQ +M
Sbjct: 61 QGHHEIVSLLLESEVEINLRNYRGQGRVM 89
>Os01g0974400 Zinc finger, RING-type domain containing protein
Length = 446
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 122/391 (31%), Positives = 177/391 (45%), Gaps = 48/391 (12%)
Query: 42 VGNSFGCSASGER--LVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHH 99
+G+ CS + L AA+ GD+ ALL +P LAR +T R + LH AAA G
Sbjct: 1 MGHGLSCSRDTDEYDLFRAAQLGDIHALSALLAADPALARRATVYDRFTALHIAAANGRL 60
Query: 100 EIVSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHF 159
+++S+LL+ ++++ + + QT LM A G+ E V L+ ANV D + LH
Sbjct: 61 QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120
Query: 160 AALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLTP 219
AA +GHA CL+ +L + +GP A G + VN + + G TP
Sbjct: 121 AAYYGHAECLQAILGAAAQA--------------QGPVA--ASWGFARFVNVRDERGATP 164
Query: 220 LHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLI 279
LH+AA + CV+LLLD GA V T G GST LH AA G+ C + L+
Sbjct: 165 LHLAARHARASCVRLLLDKGAIVSAPTAVYGFP------GSTALHLAARAGSMECIRELL 218
Query: 280 ARGASLSAQNASGWTPLMVA-RSWHR--------NSLEEILSKEPESRIRTVPSPYLCLP 330
A GA ++++G VA R HR + E I+ P I + + L
Sbjct: 219 AWGADRLQRDSAGRIAYAVAMRRGHRACAALLNPAAAEPIVWPSPLKFIGELEADAKALL 278
Query: 331 LMSIMSIAREFGWRYLNQSPVCID-------------PCAVCLEGSCSVAAEGCKHEFCT 377
++M RE R L+ S + I C +C E +CS+ + C H+ C
Sbjct: 279 EAALMEANREREKRILHGSDINIKGGDEEEESEDEEEACNICFEQACSMEVKECGHQMCA 338
Query: 378 RCALYLCSTSYTSVSPAGAIP--CPLCRHPI 406
C L +C S + P CP CR I
Sbjct: 339 ACTLAICCHSKPNPKTLLLHPPACPFCRTTI 369
>Os05g0112000 Zinc finger, RING-type domain containing protein
Length = 450
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 157/364 (43%), Gaps = 64/364 (17%)
Query: 79 RYSTFGGRNSPLHYAAAQGHHEIVSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTL 138
R +T R S LH AAA G E++S+ L+ G + N QT LM A +G + V L
Sbjct: 40 RRATLYDRLSVLHIAAANGRIEVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKL 99
Query: 139 MLFNANVHRTDYLNGGSALHFAALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSA 198
+ +AN+ D ++ + LH AA +GH CL+ +LA ++ P A
Sbjct: 100 LQADANILMFDSVHARTCLHHAAYYGHVDCLQAILA----------------AAQTTPVA 143
Query: 199 DLDEDGLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGA 258
D G + VN + D G TPLH+AA G CVQ+LL+ GA V T G
Sbjct: 144 --DSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFP------ 195
Query: 259 GSTPLHYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVARSWHR---------NSLEE 309
GST LH AA GN C + L+A GA ++++G P VA + S E
Sbjct: 196 GSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEP 255
Query: 310 ILSKEPESRIRTVPSPYLCLPLMSIMSIAREFGWRYLNQSPVCI---------------- 353
++ P I + L ++M RE + LN + +
Sbjct: 256 MVWPSPLKFISELEPEAKALLEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACS 315
Query: 354 -----DPCAVCLEGSCSVAAEGCKHEFCTRCALYLC------STSYTSVSPAGAIPCPLC 402
+ C +C + +C++ + C H+ C C L LC T+ T SPA CP C
Sbjct: 316 EVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTTLTPPSPA----CPFC 371
Query: 403 RHPI 406
R I
Sbjct: 372 RGSI 375
>Os12g0599900 Tetratricopeptide region domain containing protein
Length = 423
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 156/339 (46%), Gaps = 39/339 (11%)
Query: 55 LVSAARDGDLQEARALLEYNPRLAR--YSTFGGRNSPLHYAAAQGHHEIVSLLLE-SGVE 111
++ AA DGDL L E +L + GRN+ LH AA+ GH EI L+E SG++
Sbjct: 9 VLQAALDGDLH---LLCEMAKKLDLRGFKDMNGRNA-LHLAASYGHLEICKFLVEESGLD 64
Query: 112 INLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRL 171
+N ++RG+T ++ A G V+ L+ + + G LH+AA +GH +RL
Sbjct: 65 VNSGSHRGETPILLAACDGDINVLIYLLDHGGDPAIPNA-GGFMPLHYAAEYGHVDVVRL 123
Query: 172 VLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMV-------NQKADGGLTPLHMAA 224
+L+ V P ++ L+ D D + K++ N+ + L+PL +A
Sbjct: 124 LLSKGVHVDPLNYSGAPLHLATAN-----DHDQVAKVLLEHGADPNRVVNHVLSPLVVAC 178
Query: 225 LNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLIARGAS 284
+ ++C++LL+ GA V + + G +TPL A G+A ++L+ GA
Sbjct: 179 CSHSLKCMKLLIKAGADVNDRSS--------TGPRTTPLVLAVDDGSADIVKILLEAGAD 230
Query: 285 LSAQNASGWTPLMVARSWHRNSLEEILSKEPESRIRTVPSPYLCLPLMSIMSIAREFGWR 344
+ +N G P+M+A + + L EIL RT P P CLP S+ I R R
Sbjct: 231 PNIRNEDGRIPIMMAAARGQRELVEILFP------RTKPIP--CLPDWSVDGIIRTM--R 280
Query: 345 YLNQSPVCIDPCAVCLEGSCSVAAEG-CKHEFCTRCALY 382
+ P P + + S A E + E+ T Y
Sbjct: 281 FTRTEPEDAVPVEILVSDSKLNAKEAFAEGEYITAIYFY 319
>Os02g0184000 Zinc finger, DHHC-type domain containing protein
Length = 654
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 104/249 (41%), Gaps = 43/249 (17%)
Query: 53 ERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEIVSLLLESGVEI 112
+ + + A GDL++ L+E R G ++ L +AA +LE G ++
Sbjct: 47 DDVYTGAAYGDLEKLHRLVEREGRPVTEPDALGYHA-LQWAALNNRVAAAQYILEHGADV 105
Query: 113 NLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRLV 172
N ++ GQTAL + GH +V + L+ A V D L G H AA +G L +
Sbjct: 106 NAIDHTGQTALHWSAVRGHIQVAELLLKEGAKVDAAD-LYGYQTTHVAAQYGQTSYLYHI 164
Query: 173 LADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLTPLHMAALNGHVECV 232
+A WN+ D P D G +PLH AA G + V
Sbjct: 165 VAK--------WNADPDV-----PDND----------------GRSPLHWAAYKGFADSV 195
Query: 233 QLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLIARGA--SLSAQNA 290
+LLL LGA E G TPLH+AA GN C +L+ G L Q+
Sbjct: 196 RLLLFLGAYRGRQDKE----------GCTPLHWAAIRGNLESCTVLVQAGKKEDLMVQDN 245
Query: 291 SGWTPLMVA 299
+G TP +A
Sbjct: 246 TGLTPAQLA 254
>Os08g0542700 Ankyrin repeat containing protein
Length = 557
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 92/224 (41%), Gaps = 40/224 (17%)
Query: 90 LHYAAAQGHHEIVSLLLESGVEINLR-NYRGQTALMQACQYGHWEVVQTLMLFNANVHRT 148
H AA QGH E++ LL++ + + N TAL A GH E+V L+ +AN+ R
Sbjct: 124 FHIAAKQGHLEVLKELLQAFPALAMTTNSVNATALDTAAILGHTEIVNLLLESDANLARI 183
Query: 149 DYLNGGSALHFAALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKM 208
NG + LH AA GH +R SL P L D
Sbjct: 184 ARNNGKTVLHSAARLGHVEIVR-------------------SLLSRDPGIGLRTD----- 219
Query: 209 VNQKADGGLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAAC 268
G T LHMA+ + E V LL SVI +ED G+ PLH A
Sbjct: 220 -----KKGQTALHMASKGQNAEIVIELLKPDISVIH--LEDNK-------GNRPLHVATR 265
Query: 269 GGNAVCCQ-LLIARGASLSAQNASGWTPLMVARSWHRNSLEEIL 311
N V Q LL G ++A N SG T L +A + L IL
Sbjct: 266 KANIVIVQTLLSVEGIEVNAVNRSGHTALAIAEQLNNEELVNIL 309
>Os06g0128700 Zinc finger, RING-type domain containing protein
Length = 170
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 354 DPCAVCLEGSCSVAAEGCKHEFCTRCALYLCST--SYTSVSPAGAIPCPLCRHPIIAF-- 409
D CAVCLE C+VAAEGC HE C +CA+ LCS SY S AG IPCPLCR I +F
Sbjct: 44 DACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIASFRT 103
Query: 410 TALP 413
TA P
Sbjct: 104 TAAP 107
>Os12g0600100 Tetratricopeptide-like helical domain containing protein
Length = 387
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 109/254 (42%), Gaps = 52/254 (20%)
Query: 124 MQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRLVLAD-------- 175
+QA Q G+ +++ M ++ NG SALHFAA HGH C + ++ +
Sbjct: 10 LQAAQDGNLRLLRK-MAKKLDLRGVKDKNGLSALHFAASHGHLDCCKFLVEESGLDVNSV 68
Query: 176 -YVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGGLTPLHMAALNGHVECVQL 234
+ P F+ ++ ++ G D D + + + G TPLH AA NGH E V+L
Sbjct: 69 GHKGETPVFYAAIDGNVQVLGYLLDHGGDPV-----KPEERGCTPLHNAAENGHDEAVRL 123
Query: 235 LLDLGASV---------------------IEATIEDGTTID-LIGAGSTPLHYAACGGNA 272
LL G V ++ +E G + ++ +PL A CG +
Sbjct: 124 LLSKGVHVDPLNYRGAPLHLAASKDRVQAMKVLLEHGADPNRVVNHIFSPLMMACCGHSL 183
Query: 273 VCCQLLIARGASLSAQNAS-------GWTPLMVARSWHRNSLEEILSKEPESRIRTVPSP 325
C +LL+ GA ++ A G P+MVA + + L EIL RT P P
Sbjct: 184 KCVKLLVEAGADVNGAGADPNIPDEEGRIPIMVAAARGQRELVEILFP------RTKPIP 237
Query: 326 YLCLPLMSIMSIAR 339
CLP ++ I R
Sbjct: 238 --CLPDWNVDGIIR 249
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,792,226
Number of extensions: 888094
Number of successful extensions: 3517
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 3478
Number of HSP's successfully gapped: 14
Length of query: 531
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 425
Effective length of database: 11,501,117
Effective search space: 4887974725
Effective search space used: 4887974725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)