Os02g0184000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os02g0184000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.09 | 0.27 | 11.1 | -0.221 | 0.286 | -0.219 | 0.241 | 0.287 | -0.0211 | 22 | 19.9 | 74 | -- | -- |
| 33.35 | 0.269 | 11.1 | -0.191 | 0.272 | -0.271 | 0.262 | -- | -0.0142 | 22 | 19.73 | 205 | -- | -- |
| 33.28 | 0.269 | 11.2 | -0.243 | 0.287 | -0.226 | -- | 0.362 | -0.0213 | 22 | 19.42 | 65 | -- | -- |
| 33.59 | 0.27 | 11.1 | -0.221 | 0.275 | -0.315 | -- | -- | -0.0149 | 22.1 | 19.3 | 185 | -- | -- |
| 37.7 | 0.286 | 11.1 | -0.234 | -- | -0.266 | -- | 0.165 | -0.0213 | -- | 19.56 | 306 | -- | -- |
| 35.55 | 0.28 | 11.1 | -0.106 | 0.258 | -- | 0.353 | -- | 0.0295 | 21.5 | -- | -- | -- | -- |
| 36.01 | 0.281 | 11.1 | -0.119 | 0.257 | -- | -- | -- | 0.029 | 21.5 | -- | -- | -- | -- |
| 37.76 | 0.286 | 11.1 | -0.216 | -- | -0.298 | -- | -- | -0.0181 | -- | 19.52 | 318 | -- | -- |
| 34.7 | 0.274 | 11.1 | -- | 0.27 | -0.226 | -- | -- | 0.0154 | 22 | 19.8 | 166 | -- | -- |
| 39.89 | 0.295 | 11.1 | -0.117 | -- | -- | -- | -- | 0.0283 | -- | -- | -- | -- | -- |
| 36.38 | 0.282 | 11.1 | -- | 0.257 | -- | -- | -- | 0.0423 | 21.5 | -- | -- | -- | -- |
| 38.84 | 0.29 | 11.1 | -- | -- | -0.219 | -- | -- | 0.0134 | -- | 19.71 | 309 | -- | -- |
| 40.25 | 0.296 | 11.1 | -- | -- | -- | -- | -- | 0.0413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.22 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 4 | 29.45 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 5 | 29.55 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 7 | 29.91 | wind | 3.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 8 | 29.94 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 15 | 30.70 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 18 | 30.84 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 22 | 31.28 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 25 | 31.37 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 26 | 31.42 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 27 | 31.44 | wind | 7.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 34 | 31.73 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 35 | 31.73 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 42 | 31.88 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 50 | 31.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 54 | 31.90 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 60 | 31.90 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 61 | 31.90 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 62 | 31.90 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 63 | 31.90 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 67 | 31.93 | wind | 5.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 70 | 31.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 72 | 31.93 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 73 | 31.93 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 76 | 31.93 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 81 | 31.93 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 1 |
| 82 | 31.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 83 | 31.93 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 95 | 32.14 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 96 | 32.18 | wind | 9.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 115 | 32.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 118 | 32.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 122 | 32.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 5 |
| 125 | 32.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 127 | 32.28 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 129 | 32.28 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 16 |
| 136 | 32.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 165 | 32.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 18 |
| 172 | 32.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 184 | 32.34 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 199 | 32.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 247 | 32.37 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 248 | 32.37 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 296 | 32.40 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 316 | 32.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 322 | 32.45 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 330 | 32.46 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 344 | 32.48 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 345 | 32.48 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 368 | 32.51 | humidity | 90.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 382 | 32.53 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 20 |
| 395 | 32.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 396 | 32.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 413 | 32.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 647 | 32.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 689 | 32.73 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 736 | 32.75 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 757 | 32.76 | humidity | 90.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 769 | 32.76 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 796 | 32.77 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 13 |
| 814 | 32.78 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 921 | 32.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 922 | 32.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 962 | 32.82 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 990 | 32.83 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |