Os08g0258200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0258200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.19 | 0.287 | 11.6 | 0.868 | 0.242 | -0.663 | -0.245 | -1.25 | 0.655 | 1.22 | 1.001 | 256 | -- | -- |
| 38.37 | 0.289 | 11.6 | 0.905 | 0.232 | -0.681 | 0.459 | -- | 0.665 | 0.317 | -37.5 | 275 | -- | -- |
| 37.27 | 0.284 | 11.6 | 0.878 | 0.241 | -0.669 | -- | -0.991 | 0.659 | 0.879 | 1.267 | 257 | -- | -- |
| 39.25 | 0.292 | 11.6 | 0.884 | 0.251 | -0.662 | -- | -- | 0.661 | 0.771 | 0.7158 | 275 | -- | -- |
| 38.53 | 0.289 | 11.6 | 0.889 | -- | -0.9 | -- | -1.02 | 0.674 | -- | -39.65 | 247 | -- | -- |
| 43.85 | 0.31 | 11.6 | 0.868 | 0.652 | -- | 0.419 | -- | 0.618 | 1.79 | -- | -- | -- | -- |
| 44.53 | 0.312 | 11.6 | 0.854 | 0.653 | -- | -- | -- | 0.616 | 1.86 | -- | -- | -- | -- |
| 40.79 | 0.297 | 11.6 | 0.891 | -- | -0.894 | -- | -- | 0.679 | -- | -44.08 | 257 | -- | -- |
| 59.54 | 0.359 | 11.6 | -- | 0.329 | -0.567 | -- | -- | 0.559 | 1.26 | 2.362 | 270 | -- | -- |
| 70.35 | 0.392 | 11.6 | 0.881 | -- | -- | -- | -- | 0.631 | -- | -- | -- | -- | -- |
| 63.76 | 0.374 | 11.6 | -- | 0.669 | -- | -- | -- | 0.521 | 1.9 | -- | -- | -- | -- |
| 61.68 | 0.366 | 11.6 | -- | -- | -0.884 | -- | -- | 0.579 | -- | -44.53 | 247 | -- | -- |
| 90.83 | 0.445 | 11.6 | -- | -- | -- | -- | -- | 0.533 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.27 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 3 | 35.36 | humidity | 80 | 14400 | < th | dose dependent | sin | 14 | NA |
| 5 | 35.37 | humidity | 80 | 14400 | < th | dose dependent | rect. | 15 | 18 |
| 9 | 35.43 | humidity | 80 | 14400 | < th | dose dependent | rect. | 15 | 14 |
| 11 | 35.44 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 13 | 35.44 | humidity | 80 | 14400 | < th | dose dependent | rect. | 15 | 11 |
| 43 | 35.53 | humidity | 70 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 60 | 35.56 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 83 | 35.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 98 | 35.62 | humidity | 70 | 14400 | > th | dose independent | sin | 12 | NA |
| 112 | 35.65 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 7 |
| 123 | 35.65 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 149 | 35.68 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 22 |
| 155 | 35.69 | humidity | 70 | 14400 | > th | dose independent | no | NA | NA |
| 156 | 35.69 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 15 |
| 210 | 35.70 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 214 | 35.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 230 | 35.71 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 233 | 35.72 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 260 | 35.73 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 284 | 35.75 | humidity | 70 | 14400 | < th | dose independent | no | NA | NA |
| 289 | 35.75 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 391 | 35.76 | humidity | 90 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 410 | 35.77 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 411 | 35.77 | humidity | 80 | 14400 | < th | dose dependent | no | NA | NA |
| 417 | 35.77 | humidity | 80 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 430 | 35.78 | humidity | 80 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 435 | 35.79 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 458 | 35.79 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 23 |
| 483 | 35.81 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 501 | 35.82 | humidity | 70 | 14400 | < th | dose independent | sin | 0 | NA |
| 540 | 35.84 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 546 | 35.84 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 599 | 35.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 603 | 35.87 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 639 | 35.90 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 642 | 35.90 | humidity | 70 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 648 | 35.90 | humidity | 70 | 14400 | > th | dose independent | rect. | 12 | 11 |
| 658 | 35.90 | humidity | 70 | 14400 | > th | dose independent | rect. | 12 | 14 |
| 707 | 35.91 | humidity | 50 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 713 | 35.92 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 726 | 35.93 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 728 | 35.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 737 | 35.94 | humidity | 70 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 760 | 35.95 | humidity | 70 | 14400 | < th | dose independent | sin | 12 | NA |
| 817 | 35.99 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 821 | 35.99 | wind | 5 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 822 | 35.99 | humidity | 80 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 827 | 36.00 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 993 | 36.07 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 4 |