Os05g0112000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os05g0112000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.44 | 0.377 | 9.82 | 1 | 0.857 | 0.296 | 0.567 | 1.46 | 0.763 | 21.1 | 0.2119 | 5309 | -- | -- |
| 65.27 | 0.376 | 9.84 | 0.963 | 0.843 | 0.539 | 0.561 | -- | 0.773 | 21.2 | 0.7016 | 15307 | -- | -- |
| 65.52 | 0.377 | 9.82 | 0.999 | 0.853 | 0.29 | -- | 1.39 | 0.761 | 21 | 0.2755 | 5366 | -- | -- |
| 65.76 | 0.378 | 9.85 | 0.793 | 0.855 | 0.585 | -- | -- | 0.779 | 21.1 | 0.8606 | 23779 | -- | -- |
| 105.07 | 0.477 | 9.81 | 1 | -- | 0.486 | -- | 0.901 | 0.767 | -- | 0.9561 | 2085 | -- | -- |
| 72.1 | 0.398 | 9.86 | 1.16 | 0.857 | -- | 0.592 | -- | 0.721 | 21.2 | -- | -- | -- | -- |
| 73.28 | 0.401 | 9.86 | 1.14 | 0.859 | -- | -- | -- | 0.721 | 21 | -- | -- | -- | -- |
| 105.93 | 0.479 | 9.81 | 1.02 | -- | 0.499 | -- | -- | 0.762 | -- | 1.031 | 2085 | -- | -- |
| 74.17 | 0.401 | 9.85 | -- | 0.858 | 0.756 | -- | -- | 0.782 | 21.2 | 1.411 | 47520 | -- | -- |
| 115.73 | 0.503 | 9.84 | 1.15 | -- | -- | -- | -- | 0.716 | -- | -- | -- | -- | -- |
| 107.81 | 0.486 | 9.89 | -- | 0.858 | -- | -- | -- | 0.593 | 21.1 | -- | -- | -- | -- |
| 116.78 | 0.503 | 9.82 | -- | -- | 0.746 | -- | -- | 0.778 | -- | 1.466 | 47520 | -- | -- |
| 150.37 | 0.572 | 9.86 | -- | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 28 | 54.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 9 |
| 32 | 55.19 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 7 |
| 76 | 57.20 | temperature | 15 | 10 | > th | dose dependent | sin | 3 | NA |
| 84 | 57.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 104 | 57.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 119 | 58.22 | temperature | 25 | 10 | > th | dose dependent | sin | 7 | NA |
| 133 | 58.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 155 | 58.60 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 189 | 58.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 198 | 59.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 258 | 59.50 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 15 |
| 295 | 59.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 16 |
| 333 | 60.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 351 | 60.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 385 | 60.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 20 |
| 409 | 60.33 | wind | 5 | 270 | < th | dose independent | rect. | 3 | 8 |
| 414 | 60.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 19 |
| 415 | 60.35 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 4 |
| 484 | 60.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 497 | 60.80 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 514 | 60.84 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 525 | 60.88 | wind | 9 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 555 | 60.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 594 | 61.07 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 8 |
| 604 | 61.09 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 11 | 8 |
| 618 | 61.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 6 |
| 647 | 61.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 735 | 61.45 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 8 |
| 739 | 61.46 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 6 |
| 773 | 61.51 | radiation | 1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 802 | 61.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 7 |
| 823 | 61.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 9 |
| 838 | 61.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 904 | 61.80 | atmosphere | 995 | 270 | > th | dose independent | rect. | 11 | 16 |
| 909 | 61.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 19 |
| 933 | 61.85 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 956 | 61.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 12 |