BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0112000 Os05g0112000|AK107650
(450 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0112000 Zinc finger, RING-type domain containing protein 776 0.0
Os01g0974400 Zinc finger, RING-type domain containing protein 475 e-134
Os02g0791200 Zinc finger, RING-type domain containing protein 120 2e-27
Os08g0258200 Zinc finger, RING-type domain containing protein 102 7e-22
Os03g0275300 Conserved hypothetical protein 83 3e-16
Os01g0572600 76 5e-14
Os06g0644500 Zinc finger, DHHC-type domain containing protein 73 5e-13
Os03g0281100 Ankyrin repeat containing protein 73 5e-13
Os05g0103600 Similar to Ankyrin-like protein 69 6e-12
Os02g0184000 Zinc finger, DHHC-type domain containing protein 69 6e-12
Os10g0465100 69 6e-12
Os12g0599900 Tetratricopeptide region domain containing pro... 66 4e-11
>Os05g0112000 Zinc finger, RING-type domain containing protein
Length = 450
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/450 (85%), Positives = 386/450 (85%)
Query: 1 MGHGVSCARTGDEHDFFXXXXXXXXXXXXXXXXXXXXXXXXXTLYDRLSVLHIAAANGRI 60
MGHGVSCARTGDEHDFF TLYDRLSVLHIAAANGRI
Sbjct: 1 MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60
Query: 61 EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120
EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH
Sbjct: 61 EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120
Query: 121 AAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLE 180
AAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLE
Sbjct: 121 AAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLE 180
Query: 181 NGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRN 240
NGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRN
Sbjct: 181 NGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRN 240
Query: 241 HGACAALLNPTSAEPMVWPSPLKFISXXXXXXXXXXXXXXXXXNREREKKILNGTKYXXX 300
HGACAALLNPTSAEPMVWPSPLKFIS NREREKKILNGTKY
Sbjct: 241 HGACAALLNPTSAEPMVWPSPLKFISELEPEAKALLEAALMEANREREKKILNGTKYSLP 300
Query: 301 XXXXXXXXXXXXXXXXXXXTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTT 360
TELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTT
Sbjct: 301 SPSPGDDSADDDACSEVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTT 360
Query: 361 LTPPSPACPFCRGSISRLVVAQTRSACDPDKPSSLQLTRKRSRRSHNLSEGSSSFKGLPS 420
LTPPSPACPFCRGSISRLVVAQTRSACDPDKPSSLQLTRKRSRRSHNLSEGSSSFKGLPS
Sbjct: 361 LTPPSPACPFCRGSISRLVVAQTRSACDPDKPSSLQLTRKRSRRSHNLSEGSSSFKGLPS 420
Query: 421 AMGSFSKLGRGSSRMADSDSSNLDKPEHDL 450
AMGSFSKLGRGSSRMADSDSSNLDKPEHDL
Sbjct: 421 AMGSFSKLGRGSSRMADSDSSNLDKPEHDL 450
>Os01g0974400 Zinc finger, RING-type domain containing protein
Length = 446
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/456 (54%), Positives = 298/456 (65%), Gaps = 28/456 (6%)
Query: 1 MGHGVSCARTGDEHDFFXXXXXXXXXXXXXXXXXXXXXXXXXTLYDRLSVLHIAAANGRI 60
MGHG+SC+R DE+D F T+YDR + LHIAAANGR+
Sbjct: 1 MGHGLSCSRDTDEYDLFRAAQLGDIHALSALLAADPALARRATVYDRFTALHIAAANGRL 60
Query: 61 EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120
+VLSM LDR D ++R KQTPLM+AAM G +CV++LL+ AN+L FDS ARTCLHH
Sbjct: 61 QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120
Query: 121 AAYYGHVDCLQAILAAAQTT--PVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVL 178
AAYYGH +CLQAIL AA PVA SWGFARFVNVRD+ GATPLHLAAR R CV++L
Sbjct: 121 AAYYGHAECLQAILGAAAQAQGPVAASWGFARFVNVRDERGATPLHLAARHARASCVRLL 180
Query: 179 LENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALK 238
L+ GAIVSA T YGFPGST+LHLAAR+G+++CIR+LLAWGADRLQRDSAGRI Y+VA++
Sbjct: 181 LDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAVAMR 240
Query: 239 RNHGACAALLNPTSAEPMVWPSPLKFISXXXXXXXXXXXXXXXXXNREREKKILNGTKYX 298
R H ACAALLNP +AEP+VWPSPLKFI NREREK+IL+G+
Sbjct: 241 RGHRACAALLNPAAAEPIVWPSPLKFIGELEADAKALLEAALMEANREREKRILHGSDIN 300
Query: 299 XXXXXXXXXXXXXXXXXXXXXTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNP 358
C ICF+QAC++EV++CGHQMCA CTLA+CCH+KPNP
Sbjct: 301 IKGGDEEEESEDEEEA--------CNICFEQACSMEVKECGHQMCAACTLAICCHSKPNP 352
Query: 359 TTLTPPSPACPFCRGSISRLVVAQTRSACDPDKPSSLQLTRKRSRRSHNLSEGSSSFK-G 417
TL PACPFCR +ISRLVVA T S ++ SSSFK G
Sbjct: 353 KTLLLHPPACPFCRTTISRLVVATTNS--------------NKTNSRRRSRSRSSSFKGG 398
Query: 418 LPSAMGSFSKLGRGSSRMADSDSSN---LDKPEHDL 450
L SAMGSFS++GRGS R+ SS DKP+HD
Sbjct: 399 LSSAMGSFSRIGRGSGRLVVDGSSVGELADKPDHDF 434
>Os02g0791200 Zinc finger, RING-type domain containing protein
Length = 531
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/365 (29%), Positives = 153/365 (41%), Gaps = 72/365 (19%)
Query: 43 TLYDRLSVLHIAAANGRIEVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQA 102
T R S LH AAA G E++S+ L+ G + N QT LM A +G + V L+
Sbjct: 82 TFGGRNSPLHYAAAQGHHEIVSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLF 141
Query: 103 DANILMFDSVHARTCLHHAAYYGHVDCLQAILA----------------AAQTTPVA--D 144
+AN+ D ++ + LH AA +GH CL+ +LA ++ P A D
Sbjct: 142 NANVHRTDYLNGGSALHFAALHGHARCLRLVLADYVPSMPNFWNSMKDSLSEEGPSADLD 201
Query: 145 SWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGF------PGST 198
G + VN + D G TPLH+AA G CVQ+LL+ GA V T G GST
Sbjct: 202 EDGLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGST 261
Query: 199 SLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEP--- 255
LH AA GN C + L+A GA ++++G P VA + + +L S EP
Sbjct: 262 PLHYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVARSWHRNSLEEIL---SKEPESR 318
Query: 256 -MVWPSPLKFISXXXXXXXXXXXXXXXXXNREREKKILNGTKYXXXXXXXXXXXXXXXXX 314
PSP + RE + LN +
Sbjct: 319 IRTVPSPYLCLPLMSIMSIA----------REFGWRYLNQSPV----------------- 351
Query: 315 XXXXXTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTTLTPPSPA----CPF 370
+ C +C + +C++ + C H+ C C L LC T+ T SPA CP
Sbjct: 352 ----CIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLC------STSYTSVSPAGAIPCPL 401
Query: 371 CRGSI 375
CR I
Sbjct: 402 CRHPI 406
>Os08g0258200 Zinc finger, RING-type domain containing protein
Length = 495
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 43 TLYDRLSVLHIAAANGRIEVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQA 102
T R S LH +AA G E++S+ ++ G + N QT LM A ++G V L+
Sbjct: 47 TFGIRNSPLHYSAAKGHHEIVSLLIESGVDINLRNCRGQTALMQACLYGHWKVVQILVLF 106
Query: 103 DANILMFDSVHARTCLHHAAYYGHVDCLQAILA-----------------AAQTTPVA-D 144
ANI D T +H AA GH CL+ ++A +T A D
Sbjct: 107 KANIHKKDCFSGATAIHFAALKGHTRCLRLLVADYVPSLPEFWSVMHAKCTDETNKEAFD 166
Query: 145 SWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGF------PGST 198
+ R +N + D G TPLHLAA G CVQ+LL+ GA VS +T + G GST
Sbjct: 167 AVALRRLINNKSDGGVTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGST 226
Query: 199 SLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPM-V 257
LH AA G+ C + L+A GA+ +++ G P VA + + +L S P+ +
Sbjct: 227 PLHYAACGGSAVCCQLLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSEVPVRI 286
Query: 258 WPS 260
PS
Sbjct: 287 LPS 289
>Os03g0275300 Conserved hypothetical protein
Length = 165
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 44/67 (65%)
Query: 230 RIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFISXXXXXXXXXXXXXXXXXNREREK 289
RIPY VA+KR H ACAALLNP+SAEP+VWPSPLKFIS NREREK
Sbjct: 44 RIPYEVAMKRGHVACAALLNPSSAEPLVWPSPLKFISELEPDAKALLEAALMEANREREK 103
Query: 290 KILNGTK 296
+ L G +
Sbjct: 104 RTLKGAR 110
>Os01g0572600
Length = 119
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 38/80 (47%)
Query: 256 MVWPSPLKFISXXXXXXXXXXXXXXXXXNREREKKILNGTKYXXXXXXXXXXXXXXXXXX 315
MVWPSPLKFI NREREKKILNGTKY
Sbjct: 1 MVWPSPLKFIGELEPEAKALLEAALMEANREREKKILNGTKYSLPSPLPGDDSADDDACS 60
Query: 316 XXXXTELCCICFDQACTIEV 335
ELCCICFDQ CTIEV
Sbjct: 61 EVSDMELCCICFDQTCTIEV 80
>Os06g0644500 Zinc finger, DHHC-type domain containing protein
Length = 649
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 51 LHIAAANGRIEVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFD 110
L AA N R+ L+ GA +AV+ QT L +A+ G I LL+ A + + D
Sbjct: 90 LQWAALNNRVAAAQYILEHGADVNAVDHTGQTALHWSAVRGHIQVAELLLKEGAKVDVAD 149
Query: 111 SVHARTCLHHAAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQG 170
++ H AA YG + I+A P +V D+ G +PLH AA +G
Sbjct: 150 -LYGYQATHVAAQYGQTAFIYHIVAKWNADP-----------DVPDNDGRSPLHWAAYKG 197
Query: 171 RPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGA--DRLQRDSA 228
+++LL + A G G T LH AA GNL+ L+ G D + +D
Sbjct: 198 FADSIRLLL----YLDAYRGRQDKEGCTPLHWAAIRGNLEACTVLVQAGKKDDLMVKDKT 253
Query: 229 GRIPYSVALKRNHGACAALLN 249
G P +A ++H A L+
Sbjct: 254 GLTPAQLAADKSHRQVAFFLD 274
>Os03g0281100 Ankyrin repeat containing protein
Length = 565
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 22/175 (12%)
Query: 45 YDRLSVLHIAAANGRIEVLSMFLDRGAPPD---AVNRHKQTPLMLAAMHGKIDCVLKLLQ 101
YD LHIAA G +EV++ L A P+ V+ T L AA G ++ V LL+
Sbjct: 122 YD---ALHIAAKQGDVEVVNELLK--ALPELSMTVDASNTTALNTAATQGHMEVVRLLLE 176
Query: 102 ADANILMFDSVHARTCLHHAAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGAT 161
ADA++ + + +T LH AA GHV+ ++A++ A + AR D G T
Sbjct: 177 ADASLAVIARSNGKTALHSAARNGHVEVVRALMEAEPSIA-------ARV----DKKGQT 225
Query: 162 PLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLL 216
LH+AA+ R V LL + L S G+T+LH+AAR +++LL
Sbjct: 226 ALHMAAKGTRLDIVDALLAGEPTLLNLADS---KGNTALHIAARKARTPIVKRLL 277
>Os05g0103600 Similar to Ankyrin-like protein
Length = 460
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 103/234 (44%), Gaps = 28/234 (11%)
Query: 46 DRLSVLHIAAANGRIEVLSMFL-DRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADA 104
++ + LH AA GR V + D P D + +TPL+ A + V LL A
Sbjct: 54 NKRTALHFAAREGRTHVCHFLISDLALPVDPKDDDGETPLIHATRQAHLQTVTYLLHHGA 113
Query: 105 NILMFDSVHARTCLHHAAYYGHVDCLQAILAAA--------QTTPVADSWGFARFV---- 152
+ + S+ A T LHHAA G++D ++ L+ TP+ + G +
Sbjct: 114 DPSVASSLGA-TPLHHAAGIGNLDLMKLFLSKGVDVESESDAGTPLIWAAGHGQQEAVKL 172
Query: 153 --------NVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAA 204
N +D G TPL A G C+ +L++ GA + G G+T LH+AA
Sbjct: 173 LLQHDAKPNTENDDGITPLLSAVAAGSLPCLDILIQAGAHPNIRAG-----GATPLHIAA 227
Query: 205 RSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNP-TSAEPMV 257
GN++ I LL G+D D G P VA RN+ LL P TS P V
Sbjct: 228 DGGNMEIINCLLKAGSDPNACDDDGLKPIQVAALRNNREVVELLLPLTSPIPGV 281
>Os02g0184000 Zinc finger, DHHC-type domain containing protein
Length = 654
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 101/226 (44%), Gaps = 36/226 (15%)
Query: 51 LHIAAANGRIEVLSMFLDR-GAP---PDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANI 106
++ AA G +E L ++R G P PDA+ H L AA++ ++ +L+ A++
Sbjct: 49 VYTGAAYGDLEKLHRLVEREGRPVTEPDALGYH---ALQWAALNNRVAAAQYILEHGADV 105
Query: 107 LMFDSVHARTCLHHAAYYGHVDCLQAILAAA-----------QTTPVADSWGFARFV--- 152
D +T LH +A GH+ + +L QTT VA +G ++
Sbjct: 106 NAIDHT-GQTALHWSAVRGHIQVAELLLKEGAKVDAADLYGYQTTHVAAQYGQTSYLYHI 164
Query: 153 --------NVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAA 204
+V D+ G +PLH AA +G V++LL + A G G T LH AA
Sbjct: 165 VAKWNADPDVPDNDGRSPLHWAAYKGFADSVRLLL----FLGAYRGRQDKEGCTPLHWAA 220
Query: 205 RSGNLDCIRKLLAWG--ADRLQRDSAGRIPYSVALKRNHGACAALL 248
GNL+ L+ G D + +D+ G P +A +NH A L
Sbjct: 221 IRGNLESCTVLVQAGKKEDLMVQDNTGLTPAQLAADKNHRQVAFFL 266
>Os10g0465100
Length = 103
Score = 68.9 bits (167), Expect = 6e-12, Method: Composition-based stats.
Identities = 38/80 (47%), Positives = 38/80 (47%)
Query: 256 MVWPSPLKFISXXXXXXXXXXXXXXXXXNREREKKILNGTKYXXXXXXXXXXXXXXXXXX 315
MV PSPLKFI NREREKKILNGTKY
Sbjct: 1 MVCPSPLKFIGELEPEAKALLEAALMEANREREKKILNGTKYSLPSPLPGDDSADDDACS 60
Query: 316 XXXXTELCCICFDQACTIEV 335
ELCCICFDQACTIEV
Sbjct: 61 EVSDMELCCICFDQACTIEV 80
>Os12g0599900 Tetratricopeptide region domain containing protein
Length = 423
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 24/225 (10%)
Query: 49 SVLHIAAANGRIEVLSMFLDR-GAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANIL 107
+ LH+AA+ G +E+ ++ G ++ + +TP++LAA G I+ ++ LL +
Sbjct: 40 NALHLAASYGHLEICKFLVEESGLDVNSGSHRGETPILLAACDGDINVLIYLLDHGGDPA 99
Query: 108 MFDSVHARTCLHHAAYYGHVDCLQAILA-AAQTTPVADSWGFARFVNVRD---------D 157
+ ++ LH+AA YGHVD ++ +L+ P+ S D +
Sbjct: 100 IPNA-GGFMPLHYAAEYGHVDVVRLLLSKGVHVDPLNYSGAPLHLATANDHDQVAKVLLE 158
Query: 158 HGATPLHLAARQGRP----------GCVQVLLENGAIVSALTGSYGFPGSTSLHLAARSG 207
HGA P + P C+++L++ GA V+ + + P +T L LA G
Sbjct: 159 HGADPNRVVNHVLSPLVVACCSHSLKCMKLLIKAGADVNDRSST--GPRTTPLVLAVDDG 216
Query: 208 NLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTS 252
+ D ++ LL GAD R+ GRIP +A R +L P +
Sbjct: 217 SADIVKILLEAGADPNIRNEDGRIPIMMAAARGQRELVEILFPRT 261
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,520,636
Number of extensions: 578053
Number of successful extensions: 2870
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2863
Number of HSP's successfully gapped: 13
Length of query: 450
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 346
Effective length of database: 11,605,545
Effective search space: 4015518570
Effective search space used: 4015518570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)