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Os06g0644500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, DHHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0147) R2 : 0.0176
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0885 (0.031) R2dN8 : 0.0227 R2N8 : 0.0176
σ : 0.277
deviance : 35.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.41 0.212 10.2 0.483 0.282 -0.612 0.0871 0.766 0.222 22.8 10.02 850 -- --
21.18 0.214 10.2 0.451 0.294 -0.661 0.27 -- 0.205 22.2 10.03 850 -- --
20.44 0.211 10.2 0.483 0.284 -0.613 -- 0.815 0.222 22.8 10.03 850 -- --
21.52 0.216 10.2 0.427 0.297 -0.645 -- -- 0.206 22.5 10.02 850 -- --
22.84 0.223 10.2 0.426 -- -0.495 -- 0.601 0.2 -- 12.28 530 -- --
25.62 0.237 10.2 0.314 0.352 -- -0.128 -- 0.115 4.21 -- -- -- --
25.67 0.237 10.2 0.315 0.351 -- -- -- 0.116 4.14 -- -- -- --
23.04 0.224 10.2 0.407 -- -0.435 -- -- 0.189 -- 12.89 419 -- --
24.38 0.23 10.2 -- 0.321 -0.686 -- -- 0.13 21.9 8.59 849 -- --
32.35 0.266 10.2 0.329 -- -- -- -- 0.125 -- -- -- -- --
28.28 0.249 10.2 -- 0.357 -- -- -- 0.0806 4.13 -- -- -- --
25.45 0.235 10.2 -- -- -0.416 -- -- 0.117 -- 9.42 485 -- --
35.21 0.277 10.2 -- -- -- -- -- 0.0885 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.41 humidity 70 90 > th dose dependent rect. 5 13
2 20.45 humidity 80 90 > th dose independent rect. 5 14
3 20.50 radiation 20 90 < th dose dependent rect. 5 12
4 20.51 radiation 30 270 < th dose dependent rect. 3 13
14 20.67 radiation 30 270 < th dose dependent rect. 10 21
26 20.80 radiation 20 270 < th dose independent rect. 10 21
35 20.87 humidity 70 10 > th dose dependent rect. 6 12
39 20.91 radiation 20 270 < th dose independent rect. 3 13
67 21.03 humidity 70 90 > th dose dependent rect. 4 23
74 21.06 radiation 10 1440 > th dose independent rect. 11 1
80 21.08 radiation 20 270 < th dose dependent rect. 20 23
89 21.11 radiation 30 90 < th dose dependent rect. 4 23
95 21.14 radiation 20 270 < th dose dependent sin 2 NA
103 21.17 radiation 10 270 > th dose independent rect. 15 23
107 21.20 radiation 20 90 < th dose independent rect. 5 10
126 21.25 radiation 10 270 > th dose independent sin 2 NA
127 21.25 radiation 10 720 > th dose independent rect. 7 10
135 21.27 radiation 20 720 < th dose dependent rect. 19 21
138 21.28 humidity 70 270 > th dose dependent rect. 9 22
145 21.30 radiation 20 90 < th dose independent rect. 4 23
148 21.31 humidity 80 30 < th dose independent sin 0 NA
167 21.32 radiation 20 720 < th dose dependent rect. 4 21
170 21.33 humidity 80 90 < th dose independent rect. 23 18
171 21.33 radiation 1 90 > th dose dependent rect. 7 11
172 21.33 radiation 1 90 > th dose dependent rect. 7 22
189 21.35 humidity 80 30 > th dose independent sin 23 NA
207 21.37 radiation 20 720 < th dose dependent rect. 10 15
208 21.37 humidity 90 90 < th dose dependent rect. 21 20
209 21.37 humidity 70 90 > th dose dependent rect. 19 23
229 21.38 radiation 20 720 < th dose dependent rect. 10 13
300 21.43 humidity 80 90 < th dose independent rect. 21 22
301 21.43 humidity 80 30 > th dose independent rect. 23 23
329 21.45 radiation 20 270 < th dose dependent no NA NA
330 21.45 radiation 20 1440 < th dose dependent rect. 11 1
340 21.46 radiation 10 1440 < th dose dependent rect. 10 4
349 21.47 humidity 70 90 > th dose dependent sin 0 NA
352 21.48 radiation 10 720 > th dose independent no NA NA
548 21.50 radiation 20 720 < th dose dependent rect. 10 6
603 21.52 humidity 70 90 > th dose dependent rect. 23 23
604 21.52 radiation 1 270 > th dose dependent rect. 15 23
619 21.53 humidity 90 10 < th dose dependent rect. 9 21
665 21.57 radiation 1 270 > th dose dependent sin 4 NA
666 21.57 humidity 90 90 < th dose dependent rect. 1 16
682 21.58 humidity 90 90 < th dose dependent sin 2 NA
683 21.58 radiation 40 90 < th dose dependent no NA NA
705 21.60 humidity 80 270 > th dose independent rect. 2 16
740 21.62 humidity 70 90 > th dose dependent no NA NA
741 21.62 radiation 1 90 > th dose dependent no NA NA
795 21.62 humidity 50 10 > th dose dependent rect. 11 23
889 21.65 radiation 1 90 > th dose dependent sin 0 NA
978 21.66 humidity 80 720 > th dose independent rect. 20 21