FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0281100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0517) R2 : 0.227
β1 : 0.963 (0.19) R2dD : 0.0437 R2D : 0.0367
β2 : 1.06 (0.123) R2dC : 0.125 R2C : 0.132
β3 : 1.34 (0.226) R2dE : 0.0601 R2E : 0.0562
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0533 (0.11) R2dN8 : 0.000473 R2N8 : -0.000562
σ : 0.966
deviance : 429.87
__
_____
C
peak time of C : 0.811
E
wheather : radiation
threshold : 44.64
memory length : 3205
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.61 0.954 3.96 1.15 0.975 1.5 1.26 3.76 0.0864 1.04 48.79 2917 -- --
425.15 0.96 3.97 0.924 1.04 1.39 1.18 -- 0.0786 1.06 46.02 2934 -- --
418.63 0.953 3.96 1.1 0.977 1.56 -- 3.7 0.097 0.642 49.14 2917 -- --
429.87 0.966 3.96 0.963 1.06 1.34 -- -- 0.0533 0.811 44.64 3205 -- --
474.31 1.01 3.96 1.19 -- 1.74 -- 4.47 0.0728 -- 48.12 2699 -- --
455.23 1 3.96 0.909 1.07 -- 1.4 -- 0.0796 1.05 -- -- -- --
462.79 1.01 3.96 0.861 1.07 -- -- -- 0.0742 0.666 -- -- -- --
484.98 1.03 3.99 0.876 -- 1.5 -- -- -0.105 -- 38.33 2689 -- --
448.42 0.986 4 -- 0.98 1.22 -- -- -0.13 0.823 39.97 2833 -- --
534.44 1.08 3.95 0.899 -- -- -- -- 0.0931 -- -- -- -- --
482.33 1.03 3.99 -- 1.08 -- -- -- -0.0217 0.704 -- -- -- --
503.13 1.04 4.01 -- -- 1.57 -- -- -0.176 -- 40 2681 -- --
555.77 1.1 3.97 -- -- -- -- -- -0.00669 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 406.20 radiation 1.0 14400 < th dose dependent rect. 18 8
4 406.30 radiation 1.0 43200 < th dose independent rect. 18 7
8 406.34 radiation 1.0 43200 < th dose independent rect. 18 1
15 406.45 radiation 1.0 14400 < th dose dependent rect. 18 12
19 406.74 radiation 1.0 14400 < th dose dependent rect. 18 2
20 406.75 radiation 1.0 43200 > th dose independent rect. 18 1
90 408.21 temperature 25.0 14400 > th dose dependent rect. 23 1
105 408.28 temperature 25.0 14400 > th dose dependent rect. 22 8
111 408.34 atmosphere 1005.0 43200 > th dose independent rect. 17 1
118 408.37 wind 9.0 10 > th dose dependent rect. 15 20
128 408.70 temperature 25.0 14400 > th dose dependent rect. 1 4
132 408.74 temperature 25.0 43200 < th dose independent rect. 17 1
133 408.75 humidity 90.0 14400 > th dose independent rect. 1 1
136 408.76 atmosphere 1005.0 43200 < th dose independent rect. 17 1
138 408.79 radiation 1.0 14400 < th dose dependent rect. 22 8
141 408.81 temperature 25.0 14400 < th dose independent rect. 24 6
143 408.83 temperature 25.0 14400 < th dose independent rect. 2 3
145 408.84 temperature 25.0 14400 > th dose independent rect. 23 7
149 408.86 radiation 1.0 14400 < th dose dependent sin 13 NA
163 409.00 temperature 25.0 43200 > th dose independent rect. 17 1
174 409.13 humidity 90.0 43200 > th dose independent rect. 22 1
178 409.16 radiation 1.0 14400 < th dose dependent rect. 4 2
187 409.24 humidity 90.0 43200 < th dose independent rect. 20 1
196 409.32 temperature 25.0 14400 > th dose independent rect. 3 2
213 409.42 radiation 1.0 14400 > th dose independent rect. 5 1
216 409.44 radiation 1.0 14400 < th dose independent rect. 5 1
219 409.47 wind 5.0 43200 < th dose dependent rect. 2 2
227 409.53 temperature 25.0 14400 > th dose independent rect. 24 1
231 409.55 temperature 25.0 14400 > th dose dependent rect. 2 1
235 409.59 wind 9.0 10 > th dose dependent rect. 15 3
238 409.62 radiation 1.0 14400 < th dose independent sin 12 NA
239 409.63 radiation 1.0 14400 > th dose independent sin 12 NA
251 409.65 humidity 90.0 43200 > th dose independent rect. 20 3
255 409.68 humidity 90.0 43200 > th dose independent rect. 20 1
259 409.69 humidity 90.0 43200 > th dose independent rect. 9 15
263 409.72 precipitation 0.1 43200 < th dose independent rect. 4 1
265 409.72 precipitation 0.1 43200 < th dose dependent rect. 4 1
270 409.74 temperature 25.0 14400 > th dose independent rect. 5 1
292 409.86 radiation 1.0 14400 < th dose independent rect. 22 8
322 409.92 humidity 80.0 43200 > th dose independent rect. 16 1
325 409.92 radiation 1.0 14400 > th dose independent rect. 18 22
340 409.98 humidity 90.0 43200 > th dose dependent rect. 5 18
345 410.00 humidity 90.0 43200 > th dose dependent rect. 20 2
348 410.01 humidity 90.0 43200 > th dose independent rect. 11 12
349 410.01 humidity 90.0 43200 > th dose dependent rect. 19 4
365 410.10 radiation 1.0 14400 < th dose independent rect. 18 22
373 410.12 humidity 90.0 43200 > th dose independent rect. 16 7
385 410.15 radiation 1.0 14400 > th dose independent rect. 18 20
424 410.28 humidity 90.0 43200 > th dose dependent rect. 7 17
426 410.29 humidity 90.0 43200 < th dose independent rect. 9 14
429 410.29 radiation 1.0 14400 < th dose independent rect. 18 20
448 410.34 atmosphere 1005.0 43200 > th dose dependent rect. 19 1
449 410.34 humidity 90.0 43200 > th dose dependent rect. 7 3
463 410.37 humidity 90.0 14400 < th dose independent rect. 23 3
495 410.41 humidity 90.0 43200 > th dose dependent rect. 16 7
508 410.44 humidity 90.0 43200 > th dose dependent rect. 11 13
526 410.49 humidity 90.0 43200 < th dose independent rect. 15 8
529 410.49 humidity 90.0 43200 > th dose dependent rect. 5 12
549 410.54 humidity 90.0 43200 > th dose dependent rect. 5 9
565 410.58 wind 1.0 43200 > th dose dependent rect. 2 2
566 410.58 precipitation 0.1 43200 > th dose dependent rect. 4 4
571 410.59 precipitation 0.1 43200 > th dose independent rect. 4 4
572 410.59 humidity 80.0 43200 > th dose independent rect. 10 8
583 410.61 humidity 80.0 43200 > th dose independent rect. 14 3
591 410.63 humidity 80.0 43200 < th dose independent rect. 13 4
605 410.66 humidity 90.0 14400 < th dose independent rect. 1 1
634 410.70 humidity 80.0 43200 < th dose independent rect. 14 1
722 410.82 humidity 90.0 43200 > th dose independent sin 20 NA
756 410.84 radiation 1.0 14400 > th dose independent rect. 5 14
786 410.85 radiation 1.0 14400 > th dose independent rect. 4 12
814 410.87 radiation 1.0 14400 > th dose independent no NA NA
822 410.87 radiation 1.0 14400 < th dose independent rect. 24 16
830 410.87 radiation 1.0 14400 < th dose independent rect. 22 18
893 410.90 radiation 1.0 14400 < th dose independent rect. 5 11
910 410.92 humidity 90.0 43200 > th dose dependent sin 20 NA
982 411.00 temperature 20.0 43200 > th dose dependent rect. 17 1
998 411.01 radiation 1.0 14400 < th dose independent rect. 5 20