Os01g0974400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0974400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.74 | 0.372 | 11.6 | 0.437 | 0.284 | -1.37 | 0.279 | -2.3 | -0.0957 | 6.08 | 21.99 | 441 | -- | -- |
| 66 | 0.378 | 11.7 | 0.261 | 0.271 | -0.755 | -0.197 | -- | -0.153 | 6.07 | 24.31 | 412 | -- | -- |
| 62.84 | 0.369 | 11.6 | 0.451 | 0.279 | -1.33 | -- | -2.18 | -0.089 | 6.38 | 22 | 435 | -- | -- |
| 65.98 | 0.378 | 11.7 | 0.248 | 0.277 | -0.77 | -- | -- | -0.163 | 6.45 | 24.4 | 429 | -- | -- |
| 66.94 | 0.381 | 11.6 | 0.447 | -- | -1.16 | -- | -1.89 | -0.0835 | -- | 22.14 | 449 | -- | -- |
| 73.53 | 0.402 | 11.6 | 0.475 | 0.144 | -- | -0.668 | -- | -0.0132 | 8.89 | -- | -- | -- | -- |
| 74.19 | 0.403 | 11.6 | 0.447 | 0.2 | -- | -- | -- | -0.0168 | 6.37 | -- | -- | -- | -- |
| 69.67 | 0.389 | 11.7 | 0.283 | -- | -0.684 | -- | -- | -0.133 | -- | 24.1 | 415 | -- | -- |
| 67.48 | 0.383 | 11.7 | -- | 0.29 | -0.851 | -- | -- | -0.205 | 6.51 | 24.4 | 447 | -- | -- |
| 76.26 | 0.408 | 11.7 | 0.452 | -- | -- | -- | -- | -0.0125 | -- | -- | -- | -- | -- |
| 79.45 | 0.417 | 11.7 | -- | 0.206 | -- | -- | -- | -0.0665 | 6.25 | -- | -- | -- | -- |
| 71.56 | 0.394 | 11.7 | -- | -- | -0.802 | -- | -- | -0.182 | -- | 24.05 | 427 | -- | -- |
| 81.65 | 0.422 | 11.7 | -- | -- | -- | -- | -- | -0.0627 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.21 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 12 |
| 3 | 60.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 5 | 60.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 10 | 61.27 | temperature | 15 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 12 | 61.32 | temperature | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 30 | 61.88 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 20 |
| 38 | 62.01 | temperature | 25 | 270 | < th | dose dependent | sin | 4 | NA |
| 40 | 62.04 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 15 |
| 59 | 62.18 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 73 | 62.29 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 21 |
| 92 | 62.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 94 | 62.47 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 102 | 62.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 182 | 62.88 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 205 | 62.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 12 |
| 209 | 62.97 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 10 |
| 213 | 62.99 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 12 |
| 234 | 63.04 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 239 | 63.05 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 285 | 63.17 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 291 | 63.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 343 | 63.33 | temperature | 15 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 381 | 63.42 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 424 | 63.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 427 | 63.50 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 435 | 63.52 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 15 |
| 459 | 63.58 | temperature | 15 | 10 | > th | dose dependent | sin | 3 | NA |
| 480 | 63.61 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 484 | 63.62 | temperature | 20 | 270 | < th | dose dependent | rect. | 5 | 10 |
| 514 | 63.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 583 | 63.76 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 679 | 63.92 | humidity | 80 | 30 | < th | dose independent | sin | 7 | NA |
| 699 | 63.95 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 712 | 63.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 718 | 63.98 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 755 | 64.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 771 | 64.06 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 7 |
| 810 | 64.10 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 863 | 64.17 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 4 | 13 |
| 865 | 64.18 | wind | 7 | 10 | < th | dose independent | rect. | 4 | 13 |
| 934 | 64.29 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 17 |
| 943 | 64.30 | temperature | 20 | 270 | < th | dose independent | sin | 2 | NA |
| 967 | 64.33 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 6 |
| 968 | 64.33 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 17 |
| 978 | 64.34 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 21 |
| 982 | 64.35 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 14 |
| 993 | 64.36 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 12 |
| 996 | 64.36 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 16 |