BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0974400 Os01g0974400|AK106014
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0974400 Zinc finger, RING-type domain containing protein 679 0.0
Os05g0112000 Zinc finger, RING-type domain containing protein 405 e-113
Os09g0124800 Protein prenyltransferase domain containing pr... 71 1e-12
Os03g0281000 Similar to Ankyrin-like protein 69 6e-12
Os12g0600100 Tetratricopeptide-like helical domain containi... 66 7e-11
>Os01g0974400 Zinc finger, RING-type domain containing protein
Length = 446
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/446 (77%), Positives = 346/446 (77%)
Query: 1 MGHGLSCSRDTDEYDLFRAAQLGDIHXXXXXXXXXXXXXXXXTVYDRFTALHIAAANGRL 60
MGHGLSCSRDTDEYDLFRAAQLGDIH TVYDRFTALHIAAANGRL
Sbjct: 1 MGHGLSCSRDTDEYDLFRAAQLGDIHALSALLAADPALARRATVYDRFTALHIAAANGRL 60
Query: 61 QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120
QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH
Sbjct: 61 QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120
Query: 121 AAYYGHAECXXXXXXXXXXXXXXXXXSWGFARFVNVRDERGATPLHLAARHARASCVRLL 180
AAYYGHAEC SWGFARFVNVRDERGATPLHLAARHARASCVRLL
Sbjct: 121 AAYYGHAECLQAILGAAAQAQGPVAASWGFARFVNVRDERGATPLHLAARHARASCVRLL 180
Query: 181 LDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAVAMR 240
LDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAVAMR
Sbjct: 181 LDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAVAMR 240
Query: 241 RGHRXXXXXXXXXXXEPIVWPSPLKFIGXXXXXXXXXXXXXXXXXXXXXXKRILHGSDIN 300
RGHR EPIVWPSPLKFIG KRILHGSDIN
Sbjct: 241 RGHRACAALLNPAAAEPIVWPSPLKFIGELEADAKALLEAALMEANREREKRILHGSDIN 300
Query: 301 IKGGXXXXXXXXXXXACNICFEQACSMEVKECGHQMCAACTLAICCHSKPNPKTLLLHPP 360
IKGG ACNICFEQACSMEVKECGHQMCAACTLAICCHSKPNPKTLLLHPP
Sbjct: 301 IKGGDEEEESEDEEEACNICFEQACSMEVKECGHQMCAACTLAICCHSKPNPKTLLLHPP 360
Query: 361 ACPFCRTTISRLVVATTNSNKTNXXXXXXXXXXXFKGGLSSAMXXXXXXXXXXXXLVVDG 420
ACPFCRTTISRLVVATTNSNKTN FKGGLSSAM LVVDG
Sbjct: 361 ACPFCRTTISRLVVATTNSNKTNSRRRSRSRSSSFKGGLSSAMGSFSRIGRGSGRLVVDG 420
Query: 421 SSVGELADKPDHDFSSVAAAAAICDT 446
SSVGELADKPDHDFSSVAAAAAICDT
Sbjct: 421 SSVGELADKPDHDFSSVAAAAAICDT 446
>Os05g0112000 Zinc finger, RING-type domain containing protein
Length = 450
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/456 (48%), Positives = 269/456 (58%), Gaps = 28/456 (6%)
Query: 1 MGHGLSCSRDTDEYDLFRAAQLGDIHXXXXXXXXXXXXXXXXTVYDRFTALHIAAANGRL 60
MGHG+SC+R DE+D FRAAQLGD+ T+YDR + LHIAAANGR+
Sbjct: 1 MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60
Query: 61 QVLSMLLDRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHH 120
+VLSM LDR D ++R KQTPLM+AAM G +CV++LL+ AN+L FDS ARTCLHH
Sbjct: 61 EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120
Query: 121 AAYYGHAECXXXXXXXXXXXXXXXXXSWGFARFVNVRDERGATPLHLAARHARASCVRLL 180
AAYYGH +C SWGFARFVNVRD+ GATPLHLAAR R CV++L
Sbjct: 121 AAYYGHVDCLQAILAAAQTTPVAD--SWGFARFVNVRDDHGATPLHLAARQGRPGCVQVL 178
Query: 181 LDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAVAMR 240
L+ GAIVSA T YGFPGST+LHLAAR+G+++CIR+LLAWGADRLQRDSAGRI Y+VA++
Sbjct: 179 LENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALK 238
Query: 241 RGHRXXXXXXXXXXXEPIVWPSPLKFIGXXXXXXXXXXXXXXXXXXXXXXKRILHGSDIN 300
R H EP+VWPSPLKFI K+IL+G+ +
Sbjct: 239 RNHGACAALLNPTSAEPMVWPSPLKFISELEPEAKALLEAALMEANREREKKILNGTKYS 298
Query: 301 IKGGX--------XXXXXXXXXXACNICFEQACSMEVKECGHQMCAACTLAICCHSKPNP 352
+ C ICF+QAC++EV++CGHQMCA CTLA+CCH+KPNP
Sbjct: 299 LPSPSPGDDSADDDACSEVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPNP 358
Query: 353 KTLLLHPPACPFCRTTISRLVVATTNS--------------NKTNXXXXXXXXXXXFKGG 398
TL PACPFCR +ISRLVVA T S ++ FK G
Sbjct: 359 TTLTPPSPACPFCRGSISRLVVAQTRSACDPDKPSSLQLTRKRSRRSHNLSEGSSSFK-G 417
Query: 399 LSSAMXXXXXXXXXXXXLVVDGSSVGELADKPDHDF 434
L SAM + SS DKP+HD
Sbjct: 418 LPSAMGSFSKLGRGSSRMADSDSSN---LDKPEHDL 450
>Os09g0124800 Protein prenyltransferase domain containing protein
Length = 439
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 24/195 (12%)
Query: 50 ALHIAAANGRLQVLSMLL-DRDGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLT 108
ALH+AA GR+ VL+ L+ D DV+ + + +TPL ++A G T LL GA+ +
Sbjct: 59 ALHLAATEGRMDVLTYLVEDLRLDVNQTNDRGETPLFLSAFFGRTASTRYLLDHGADPMI 118
Query: 109 FDSPRARTCLHHAAYYGHAECXXXXXXXXXXXXXXXXXSWGFARFVN-VRDERGATPLHL 167
++ + LH AA GH E +R + V D TPLH
Sbjct: 119 VG--KSGSPLHAAAGKGHCEIVELL----------------LSRGIGIVFDSLYGTPLHT 160
Query: 168 AARHARASCVRLLLDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQR 227
AA H + S +++LLD A P V+ T L++A + S+EC++ L+ GAD R
Sbjct: 161 AAAHGQCSTMKILLDHHA---DPDKVFNL-DDTPLNMAISSKSLECVKLLIQAGADVNFR 216
Query: 228 DSAGRIAYAVAMRRG 242
DS G +A G
Sbjct: 217 DSNGATYVMMAANYG 231
>Os03g0281000 Similar to Ankyrin-like protein
Length = 682
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 48 FTALHIAAANGRLQVLSMLLDRDGDV-DVLSRKKQTPLMVAAMRGNTECVVRLLRGGANV 106
F LH+AA G ++ +LLD D + + TPL+ AA+RG+ E V LL + +
Sbjct: 256 FDVLHVAAKEGHRDIVKVLLDHDPSLGKTFGQSNVTPLITAAIRGHIEVVNLLLERVSGL 315
Query: 107 LTFDSPRARTCLHHAAYYGHAECXXXXXXXXXXXXXXXXXSWGFARFVNVRDERGATPLH 166
+ + LH A GH E AR D++G T LH
Sbjct: 316 VELSKGNGKNALHFAGRQGHVEIVKALLDADPQ----------LARRT---DKKGQTALH 362
Query: 167 LAARHARASCVRLLLDKGAIVSAPTAVYGFP---GSTALHLAARAGSMECIRELL 218
+A + A+ VR A+V+A A+ P G+ ALH+A R E + ELL
Sbjct: 363 MAVKGTSAAVVR------ALVNADPAIVMLPDRNGNLALHVATRKKRSEIVNELL 411
>Os12g0600100 Tetratricopeptide-like helical domain containing protein
Length = 387
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 93/207 (44%), Gaps = 32/207 (15%)
Query: 48 FTALHIAAANGRLQVLSMLLDRDG-DVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANV 106
+ALH AA++G L L++ G DV+ + K +TP+ AA+ GN + + LL G +
Sbjct: 39 LSALHFAASHGHLDCCKFLVEESGLDVNSVGHKGETPVFYAAIDGNVQVLGYLLDHGGDP 98
Query: 107 LTFDSPRARTC--LHHAAYYGHAECXXXXXXXXXXXXXXXXXSWGFARFVNVRDERGATP 164
+ P R C LH+AA GH E V+ + RGA P
Sbjct: 99 V---KPEERGCTPLHNAAENGHDEAVRLLLSKGV--------------HVDPLNYRGA-P 140
Query: 165 LHLAARHARASCVRLLLDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELL------ 218
LHLAA R +++LL+ GA P V S L +A S++C++ L+
Sbjct: 141 LHLAASKDRVQAMKVLLEHGA---DPNRVVNHIFSP-LMMACCGHSLKCVKLLVEAGADV 196
Query: 219 -AWGADRLQRDSAGRIAYAVAMRRGHR 244
GAD D GRI VA RG R
Sbjct: 197 NGAGADPNIPDEEGRIPIMVAAARGQR 223
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,621,480
Number of extensions: 427991
Number of successful extensions: 2306
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2297
Number of HSP's successfully gapped: 6
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)