Os03g0281000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ankyrin-like protein.
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Os03g0281000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ankyrin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.79 | 0.261 | 12.1 | 1.08 | 1.34 | -0.906 | -0.656 | -0.333 | 0.267 | 2.35 | 24.97 | 888 | -- | -- |
| 30.81 | 0.259 | 12.1 | 1.15 | 1.35 | -0.932 | -0.644 | -- | 0.285 | 2.36 | 24.88 | 903 | -- | -- |
| 32.26 | 0.265 | 12.1 | 1.1 | 1.36 | -0.9 | -- | -0.438 | 0.276 | 2.42 | 24.83 | 924 | -- | -- |
| 32.37 | 0.265 | 12.1 | 1.17 | 1.37 | -0.936 | -- | -- | 0.292 | 2.43 | 24.92 | 932 | -- | -- |
| 62.68 | 0.369 | 12 | 1.56 | -- | -1.9 | -- | 1.57 | 0.55 | -- | 23.06 | 54 | -- | -- |
| 51.96 | 0.338 | 12.1 | 0.921 | 1.29 | -- | -0.743 | -- | 0.205 | 3.1 | -- | -- | -- | -- |
| 53.76 | 0.343 | 12.1 | 0.936 | 1.29 | -- | -- | -- | 0.209 | 3.15 | -- | -- | -- | -- |
| 65.25 | 0.376 | 12 | 1.36 | -- | -1.84 | -- | -- | 0.535 | -- | 21.13 | 58 | -- | -- |
| 65.73 | 0.378 | 12.1 | -- | 1.32 | -0.641 | -- | -- | 0.0827 | 2.68 | 27.25 | 903 | -- | -- |
| 148.74 | 0.57 | 12.1 | 0.991 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 76.88 | 0.41 | 12.1 | -- | 1.31 | -- | -- | -- | 0.105 | 3.15 | -- | -- | -- | -- |
| 108.59 | 0.485 | 12.1 | -- | -- | -1.61 | -- | -- | 0.291 | -- | 23.81 | 38 | -- | -- |
| 174.67 | 0.617 | 12.1 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.41 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 6 | 31.65 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 7 | 31.66 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 19 | 31.70 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 20 | 31.70 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 39 | 31.75 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 101 | 32.05 | temperature | 20.0 | 90 | > th | dose dependent | no | NA | NA |
| 121 | 32.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 140 | 32.24 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 147 | 32.27 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 154 | 32.29 | temperature | 25.0 | 720 | > th | dose dependent | sin | 20 | NA |
| 158 | 32.31 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 165 | 32.35 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 184 | 32.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 185 | 32.39 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 0 | NA |
| 187 | 32.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 217 | 32.43 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 226 | 32.45 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 339 | 32.60 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 626 | 33.03 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 648 | 33.08 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 686 | 33.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 736 | 33.24 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 744 | 33.24 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 747 | 33.24 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 764 | 33.26 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 863 | 33.41 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 879 | 33.43 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 1 |