Os04g0351300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0351300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.27 | 0.439 | 2.93 | -0.013 | 0.00192 | -0.268 | -0.596 | 1.4 | 0.0837 | 6.66 | 20.8 | 3127 | -- | -- |
| 90.6 | 0.443 | 2.98 | -0.236 | 0.0186 | -0.511 | -0.644 | -- | 0.0481 | 6.06 | 20.6 | 3120 | -- | -- |
| 88.17 | 0.437 | 2.93 | -0.0195 | 0.000856 | -0.264 | -- | 1.4 | 0.0854 | 18.6 | 20.82 | 3138 | -- | -- |
| 90.39 | 0.443 | 2.98 | -0.251 | 0.0117 | -0.644 | -- | -- | 0.0137 | 8.54 | 18.71 | 3324 | -- | -- |
| 88.17 | 0.437 | 2.93 | -0.0262 | -- | -0.262 | -- | 1.39 | 0.0837 | -- | 20.82 | 3138 | -- | -- |
| 95.02 | 0.457 | 3.01 | -0.56 | 0.00245 | -- | 0.547 | -- | -0.116 | 18.7 | -- | -- | -- | -- |
| 95.65 | 0.458 | 3.01 | -0.568 | 0.0467 | -- | -- | -- | -0.114 | 13.2 | -- | -- | -- | -- |
| 90.4 | 0.443 | 2.99 | -0.258 | -- | -0.63 | -- | -- | 0.0102 | -- | 18.7 | 3305 | -- | -- |
| 90.81 | 0.444 | 2.97 | -- | 0.0221 | -0.71 | -- | -- | 0.0708 | 12 | 19 | 10040 | -- | -- |
| 95.78 | 0.457 | 3.01 | -0.569 | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
| 104.14 | 0.477 | 3 | -- | 0.0566 | -- | -- | -- | -0.0507 | 13.6 | -- | -- | -- | -- |
| 90.26 | 0.442 | 2.97 | -- | -- | -0.707 | -- | -- | 0.067 | -- | 18.1 | 15113 | -- | -- |
| 104.34 | 0.477 | 3 | -- | -- | -- | -- | -- | -0.0516 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.78 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 6 |
| 9 | 85.04 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 15 | 85.17 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 16 | 85.19 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 2 |
| 19 | 85.21 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 12 |
| 27 | 85.42 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 30 | 85.50 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 1 |
| 31 | 85.50 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 41 | 85.71 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 18 | 1 |
| 43 | 85.74 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 3 |
| 45 | 85.86 | radiation | 30.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 72 | 86.59 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 74 | 86.59 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 4 |
| 75 | 86.62 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 77 | 86.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 78 | 86.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 84 | 86.75 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 85 | 86.76 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 93 | 86.78 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 96 | 86.79 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 122 | 86.81 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 147 | 86.84 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 157 | 86.85 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 172 | 86.86 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 181 | 86.87 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 196 | 86.88 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 200 | 86.88 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 247 | 86.91 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 290 | 86.93 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 330 | 86.97 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 370 | 87.00 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 394 | 87.02 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 423 | 87.02 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 500 | 87.07 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 501 | 87.08 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 502 | 87.08 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 555 | 87.11 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 583 | 87.14 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 598 | 87.15 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 612 | 87.15 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 12 | 10 |
| 639 | 87.17 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 690 | 87.19 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 692 | 87.19 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 700 | 87.20 | atmosphere | 1010.0 | 14400 | < th | dose independent | no | NA | NA |
| 738 | 87.21 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 756 | 87.22 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |
| 773 | 87.22 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 774 | 87.22 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 819 | 87.24 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 834 | 87.24 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 19 |
| 913 | 87.28 | atmosphere | 1010.0 | 14400 | > th | dose dependent | sin | 19 | NA |
| 999 | 87.33 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 1000 | 87.33 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 3 |