BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0351300 Os04g0351300|Os04g0351300
(122 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0351300 182 4e-47
Os02g0791200 Zinc finger, RING-type domain containing protein 130 2e-31
Os08g0258200 Zinc finger, RING-type domain containing protein 110 2e-25
Os10g0521600 Similar to Ankyrin-1 (Erythrocyte ankyrin) 95 1e-20
>Os04g0351300
Length = 122
Score = 182 bits (462), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 94/122 (77%), Positives = 94/122 (77%)
Query: 1 MGFLNLVGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAA 60
MGFLNLVGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAA
Sbjct: 1 MGFLNLVGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAA 60
Query: 61 QGXXXXXXXXXXXXXXXNLRNYRGQGRVMPXXXXXXXXXXXXXTAAAQEDMCGEGDDLWG 120
QG NLRNYRGQGRVMP TAAAQEDMCGEGDDLWG
Sbjct: 61 QGHHEIVSLLLESEVEINLRNYRGQGRVMPWEGERRWRGLGRRTAAAQEDMCGEGDDLWG 120
Query: 121 RM 122
RM
Sbjct: 121 RM 122
>Os02g0791200 Zinc finger, RING-type domain containing protein
Length = 531
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 69/89 (77%)
Query: 1 MGFLNLVGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAA 60
MGFL+LVGNS GCSASGERLVSA RDGDLQEARALLEYNPRLA YSTFGGRNSPLHYAAA
Sbjct: 36 MGFLSLVGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAA 95
Query: 61 QGXXXXXXXXXXXXXXXNLRNYRGQGRVM 89
QG NLRNYRGQ +M
Sbjct: 96 QGHHEIVSLLLESGVEINLRNYRGQTALM 124
>Os08g0258200 Zinc finger, RING-type domain containing protein
Length = 495
Score = 110 bits (275), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/89 (62%), Positives = 63/89 (70%)
Query: 1 MGFLNLVGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAA 60
MG L +VG+S GCSA+GERLVSA RDGD+QEA ALLE NPRLA YSTFG RNSPLHY+AA
Sbjct: 1 MGLLGMVGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAA 60
Query: 61 QGXXXXXXXXXXXXXXXNLRNYRGQGRVM 89
+G NLRN RGQ +M
Sbjct: 61 KGHHEIVSLLIESGVDINLRNCRGQTALM 89
>Os10g0521600 Similar to Ankyrin-1 (Erythrocyte ankyrin)
Length = 242
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 57/83 (68%)
Query: 7 VGNSIGCSASGERLVSADRDGDLQEARALLEYNPRLAWYSTFGGRNSPLHYAAAQGXXXX 66
+GNS+GCSASGERLVSA RDGD EAR LLE +P LA YSTFGG NSPLH+AAA+G
Sbjct: 1 MGNSLGCSASGERLVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLDI 60
Query: 67 XXXXXXXXXXXNLRNYRGQGRVM 89
N+RNY GQ +M
Sbjct: 61 VTLLLEKGADVNVRNYCGQTALM 83
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,587,913
Number of extensions: 115610
Number of successful extensions: 214
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 4
Length of query: 122
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 34
Effective length of database: 12,440,969
Effective search space: 422992946
Effective search space used: 422992946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)