Os08g0542700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os08g0542700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.31 | 0.487 | 8.04 | -1.88 | 0.0487 | -1.37 | -1.27 | 2.06 | 0.0186 | 1.44 | 28.09 | 60 | -- | -- |
| 111.66 | 0.492 | 8 | -1.53 | 0.0503 | -1.45 | -0.666 | -- | 0.0913 | 1.34 | 27.12 | 84 | -- | -- |
| 112.07 | 0.493 | 8.02 | -1.74 | 0.0955 | -1.35 | -- | 1.33 | 0.0479 | 7.47 | 27.6 | 142 | -- | -- |
| 112.99 | 0.495 | 7.99 | -1.51 | 0.0917 | -1.49 | -- | -- | 0.0934 | 4.19 | 27.37 | 63 | -- | -- |
| 112.06 | 0.493 | 8.01 | -1.65 | -- | -1.39 | -- | 0.94 | 0.0715 | -- | 27.46 | 89 | -- | -- |
| 141.79 | 0.558 | 7.92 | -1.17 | 0.341 | -- | 0.733 | -- | 0.413 | 13.8 | -- | -- | -- | -- |
| 143.86 | 0.562 | 7.92 | -1.14 | 0.344 | -- | -- | -- | 0.418 | 14.1 | -- | -- | -- | -- |
| 113.3 | 0.496 | 7.99 | -1.5 | -- | -1.43 | -- | -- | 0.105 | -- | 27.08 | 78 | -- | -- |
| 166.5 | 0.604 | 7.93 | -- | 0.136 | -0.849 | -- | -- | 0.38 | 14.7 | 26.7 | 3 | -- | -- |
| 150.95 | 0.574 | 7.92 | -1.16 | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
| 178.23 | 0.625 | 7.89 | -- | 0.366 | -- | -- | -- | 0.545 | 14.2 | -- | -- | -- | -- |
| 167.18 | 0.604 | 7.94 | -- | -- | -0.942 | -- | -- | 0.364 | -- | 27.65 | 36 | -- | -- |
| 186.23 | 0.637 | 7.9 | -- | -- | -- | -- | -- | 0.538 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.13 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 2 | 103.54 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 3 | 104.19 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 4 | 104.27 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 18 | 104.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 20 | 105.31 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 25 | 105.38 | radiation | 10 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 33 | 105.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 35 | 106.00 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 47 | 106.17 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 54 | 106.41 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 7 | 13 |
| 59 | 106.44 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 61 | 106.45 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 100 | 106.70 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 137 | 106.93 | atmosphere | 995 | 43200 | < th | dose independent | sin | 22 | NA |
| 145 | 107.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 148 | 107.04 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 156 | 107.09 | atmosphere | 995 | 43200 | > th | dose independent | sin | 22 | NA |
| 158 | 107.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 172 | 107.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 175 | 107.22 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 202 | 107.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 10 |
| 205 | 107.47 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 218 | 107.53 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 219 | 107.54 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 220 | 107.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 222 | 107.58 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 227 | 107.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 18 |
| 235 | 107.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 245 | 107.65 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 259 | 107.70 | wind | 7 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 267 | 107.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 286 | 107.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 13 |
| 302 | 107.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 314 | 107.81 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 318 | 107.82 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 323 | 107.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 324 | 107.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 16 |
| 329 | 107.84 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 333 | 107.84 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 345 | 107.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 346 | 107.86 | wind | 1 | 43200 | > th | dose dependent | sin | 1 | NA |
| 356 | 107.87 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 361 | 107.88 | wind | 7 | 43200 | < th | dose dependent | rect. | 6 | 10 |
| 409 | 107.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 416 | 107.95 | wind | 9 | 43200 | < th | dose dependent | rect. | 19 | 22 |
| 417 | 107.95 | wind | 1 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 453 | 107.98 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 455 | 107.99 | wind | 9 | 43200 | < th | dose dependent | sin | 1 | NA |
| 456 | 107.99 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 464 | 107.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 466 | 108.00 | wind | 1 | 43200 | > th | dose dependent | no | NA | NA |
| 519 | 108.04 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 541 | 108.06 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 581 | 108.10 | wind | 9 | 43200 | < th | dose dependent | no | NA | NA |
| 642 | 108.14 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 644 | 108.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 8 |
| 689 | 108.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 705 | 108.18 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 706 | 108.19 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 718 | 108.20 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 818 | 108.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 821 | 108.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 848 | 108.29 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 849 | 108.29 | wind | 3 | 43200 | > th | dose dependent | sin | 14 | NA |
| 857 | 108.30 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 880 | 108.32 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 901 | 108.34 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 915 | 108.35 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 925 | 108.36 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 952 | 108.38 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 997 | 108.41 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 14 |