Os06g0128700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0128700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.18 | 0.591 | 12.2 | 3.05 | 0.913 | -1.29 | 0.46 | -1.58 | 0.783 | 23.3 | 999.7 | 10230 | -- | -- |
| 159.16 | 0.588 | 12.2 | 3.07 | 0.942 | -1.48 | 0.516 | -- | 0.777 | 23.3 | 1000 | 10166 | -- | -- |
| 158.87 | 0.587 | 12.2 | 3.04 | 0.912 | -1.32 | -- | -1.55 | 0.782 | 23.4 | 1000 | 10172 | -- | -- |
| 159.87 | 0.589 | 12.2 | 3.08 | 0.916 | -1.52 | -- | -- | 0.784 | 23.3 | 1000 | 10166 | -- | -- |
| 210.79 | 0.676 | 12.2 | 3.06 | -- | -1.34 | -- | -1.48 | 0.785 | -- | 1000 | 10166 | -- | -- |
| 208.34 | 0.677 | 12.1 | 2.86 | 0.927 | -- | 0.459 | -- | 0.903 | 23.4 | -- | -- | -- | -- |
| 209.23 | 0.677 | 12.1 | 2.84 | 0.924 | -- | -- | -- | 0.901 | 23.5 | -- | -- | -- | -- |
| 211.45 | 0.677 | 12.2 | 3.13 | -- | -1.64 | -- | -- | 0.77 | -- | 1000 | 10173 | -- | -- |
| 402.53 | 0.934 | 12.2 | -- | 0.941 | -0.973 | -- | -- | 0.487 | 23.6 | 999 | 7852 | -- | -- |
| 262.84 | 0.758 | 12.1 | 2.86 | -- | -- | -- | -- | 0.911 | -- | -- | -- | -- | -- |
| 421.69 | 0.961 | 12.2 | -- | 0.956 | -- | -- | -- | 0.585 | 23.7 | -- | -- | -- | -- |
| 458.62 | 0.997 | 12.2 | -- | -- | -1.06 | -- | -- | 0.494 | -- | 998.7 | 8289 | -- | -- |
| 479.2 | 1.02 | 12.2 | -- | -- | -- | -- | -- | 0.593 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.00 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 2 | 150.35 | wind | 9.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 3 | 151.92 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 5 | 153.88 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 8 | 155.48 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 11 | 157.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 14 | 158.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 18 | 158.36 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 20 | 158.51 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 21 | 158.56 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 26 | 158.82 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 31 | 159.02 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 32 | 159.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 8 |
| 35 | 159.09 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 36 | 159.13 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 49 | 159.21 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 5 | 10 |
| 65 | 159.44 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 79 | 159.63 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 102 | 159.90 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 121 | 160.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 123 | 160.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 126 | 160.11 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 134 | 160.32 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 155 | 160.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 182 | 160.82 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 207 | 160.98 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 208 | 160.98 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 265 | 161.18 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 266 | 161.18 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 22 | 15 |
| 275 | 161.27 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 282 | 161.35 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 289 | 161.43 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 296 | 161.54 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 320 | 161.59 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 16 |
| 331 | 161.63 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 347 | 161.69 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 359 | 161.71 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 379 | 161.73 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 390 | 161.79 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 404 | 161.92 | humidity | 60.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 442 | 162.02 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 443 | 162.03 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 447 | 162.10 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 466 | 162.33 | radiation | 20.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 487 | 162.48 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 491 | 162.50 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 496 | 162.51 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 569 | 162.90 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 577 | 162.96 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 581 | 162.97 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 10 |
| 589 | 162.97 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 18 |
| 641 | 163.07 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 16 | 18 |
| 643 | 163.11 | radiation | 30.0 | 43200 | > th | dose dependent | rect. | 7 | 3 |
| 672 | 163.16 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 673 | 163.16 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 679 | 163.19 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 685 | 163.22 | wind | 5.0 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 687 | 163.23 | wind | 5.0 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 691 | 163.29 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 724 | 163.43 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 816 | 163.71 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 820 | 163.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 851 | 163.81 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 878 | 163.87 | wind | 5.0 | 14400 | > th | dose independent | rect. | 2 | 15 |
| 881 | 163.89 | wind | 5.0 | 14400 | > th | dose independent | rect. | 23 | 18 |
| 888 | 163.97 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 13 | 19 |
| 890 | 163.98 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 891 | 163.99 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 908 | 164.01 | humidity | 60.0 | 43200 | < th | dose independent | sin | 5 | NA |
| 914 | 164.03 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 949 | 164.15 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 969 | 164.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 21 |
| 970 | 164.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 1 | 22 |
| 984 | 164.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 989 | 164.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 991 | 164.20 | atmosphere | 995.0 | 14400 | > th | dose independent | no | NA | NA |