BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0128700 Os06g0128700|AK108566
         (170 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07270.1  | chr5:2280821-2283384 FORWARD LENGTH=514             78   2e-15
AT5G57740.1  | chr5:23394789-23397145 REVERSE LENGTH=509           64   3e-11

>AT5G07270.1 | chr5:2280821-2283384 FORWARD LENGTH=514
          Length = 513

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 51/82 (62%), Gaps = 6/82 (7%)

Query: 22  EICREQGLNLSSEVSDGFDEGADACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIKSYD 81
            I RE GL      S    +  D CAVCLER CTVAAEGC+H+LCV+CA+ LCS      
Sbjct: 293 NIAREFGLQ-----SATIGDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPS 347

Query: 82  -SAGIAGEIPCPLCRTGIASFR 102
            + G  G IPCPLCR GI +F+
Sbjct: 348 VTVGPPGSIPCPLCRHGITAFK 369



>AT5G57740.1 | chr5:23394789-23397145 REVERSE LENGTH=509
          Length = 508

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 44  DACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIKSYDSAG--IAGEIPCPLCRTGIASF 101
           D CAVCLER CTVAA+GC HE C  CA+ L +   +         G +PCPLCR GI SF
Sbjct: 319 DPCAVCLERKCTVAADGCAHEFCTNCALYLSTTSITSSKTSNVTPGSVPCPLCRNGIVSF 378



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,298,326
Number of extensions: 113163
Number of successful extensions: 424
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 3
Length of query: 170
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 79
Effective length of database: 8,611,713
Effective search space: 680325327
Effective search space used: 680325327
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)