BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0128700 Os06g0128700|AK108566
(170 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0128700 Zinc finger, RING-type domain containing protein 257 3e-69
Os02g0791200 Zinc finger, RING-type domain containing protein 72 2e-13
Os08g0258200 Zinc finger, RING-type domain containing protein 71 4e-13
>Os06g0128700 Zinc finger, RING-type domain containing protein
Length = 170
Score = 257 bits (657), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/170 (78%), Positives = 133/170 (78%)
Query: 1 NALSWSGVLCVVLYYGFVWFGEICREQGLNLSSEVSDGFDEGADACAVCLERPCTVAAEG 60
NALSWSGVLCVVLYYGFVWFGEICREQGLNLSSEVSDGFDEGADACAVCLERPCTVAAEG
Sbjct: 1 NALSWSGVLCVVLYYGFVWFGEICREQGLNLSSEVSDGFDEGADACAVCLERPCTVAAEG 60
Query: 61 CDHELCVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIASFRTTXXXXXXXXXXXXXXXX 120
CDHELCVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIASFRTT
Sbjct: 61 CDHELCVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIASFRTTAAPPPPSLAGSPARRS 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXKGYGSIDPDAGAVVPLYYAPPFAPSAILT 170
KGYGSIDPDAGAVVPLYYAPPFAPSAILT
Sbjct: 121 RRNNSGGGGGEHEASNSGGSEKGYGSIDPDAGAVVPLYYAPPFAPSAILT 170
>Os02g0791200 Zinc finger, RING-type domain containing protein
Length = 531
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 44 DACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIASF 101
D CAVCLE C+VAAEGC HE C +CA+ LCS SY S AG IPCPLCR I +F
Sbjct: 354 DPCAVCLEGSCSVAAEGCKHEFCTRCALYLCST--SYTSVSPAGAIPCPLCRHPIIAF 409
>Os08g0258200 Zinc finger, RING-type domain containing protein
Length = 495
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 44 DACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIKSYDS-AGIAGEIPCPLCRTGIASF 101
D CA+CL+ CTV+AEGC HE C KCA+ LC+ S S G+ G IPCPLCR I SF
Sbjct: 319 DPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIRGVPGSIPCPLCRHTIVSF 377
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,347,695
Number of extensions: 186167
Number of successful extensions: 635
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 3
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)