BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0750400 Os02g0750400|AK059134
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0750400 Protein prenyltransferase domain containing pr... 439 e-124
Os02g0170000 Protein prenyltransferase domain containing pr... 75 3e-14
Os08g0191900 Protein prenyltransferase domain containing pr... 75 3e-14
Os08g0107700 Similar to Rf1 protein, mitochondrial precurso... 73 1e-13
Os05g0275000 Protein prenyltransferase domain containing pr... 72 3e-13
Os04g0351333 Protein prenyltransferase domain containing pr... 70 9e-13
Os07g0548300 Similar to CRP1 69 2e-12
Os06g0199100 Protein prenyltransferase domain containing pr... 69 3e-12
Os07g0300200 Protein prenyltransferase domain containing pr... 69 3e-12
Os11g0607100 Tetratricopeptide-like helical domain containi... 69 3e-12
Os08g0248400 Protein prenyltransferase domain containing pr... 68 5e-12
Os05g0583900 Protein prenyltransferase domain containing pr... 68 5e-12
Os08g0110200 Similar to Fertility restorer 67 6e-12
Os01g0153200 Ribosomal protein S8 family protein 64 6e-11
>Os02g0750400 Protein prenyltransferase domain containing protein
Length = 211
Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM 60
MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM
Sbjct: 1 MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM 60
Query: 61 MYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP 120
MYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP
Sbjct: 61 MYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP 120
Query: 121 SASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPRTVPSK 180
SASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPRTVPSK
Sbjct: 121 SASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPRTVPSK 180
Query: 181 NSASKPDVESANNSGTDTSSKPNLSVWQVAA 211
NSASKPDVESANNSGTDTSSKPNLSVWQVAA
Sbjct: 181 NSASKPDVESANNSGTDTSSKPNLSVWQVAA 211
>Os02g0170000 Protein prenyltransferase domain containing protein
Length = 397
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 84/173 (48%)
Query: 3 QVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMY 62
+V++ + R + + TF MI YGKA+ + V ++M +G KPN T L+ +
Sbjct: 68 EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAF 127
Query: 63 AYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSA 122
A +A ++F+E+ + + + + NA+++AY GLP A ++ + G P
Sbjct: 128 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDR 187
Query: 123 STYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPR 175
++Y +L AY +A + + + + + +G+ P K + L A + R
Sbjct: 188 ASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATR 240
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 5/194 (2%)
Query: 3 QVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMY 62
+VF + KP T+ +++ + + L EKAE V ++M + G +P+ L+ Y
Sbjct: 103 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 162
Query: 63 AYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSA 122
+ A +IF + +S N ++DAY GL +A+ + + + ++G P+
Sbjct: 163 SRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTM 222
Query: 123 STYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDA-LEAF---GNTDKKPRTVP 178
++ LL A+ ++ + ++++ +++ G+ P+ F L+A L A+ G D R
Sbjct: 223 KSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPD-TFALNAMLNAYARAGRLDDMERLFA 281
Query: 179 SKNSASKPDVESAN 192
+ DV + N
Sbjct: 282 AMERRGDADVGTYN 295
>Os08g0191900 Protein prenyltransferase domain containing protein
Length = 609
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 3/170 (1%)
Query: 4 VFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYA 63
++ + R+ KP +++ +I YGKAR E+A V ++M + G +P + LI +A
Sbjct: 304 IYDQMQRTALKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILIDAFA 363
Query: 64 YCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPME-ADQLLDSVIKKGAVPSA 122
V A +F + + L S M+ AY +N M+ A++ + + G P+
Sbjct: 364 ISGLVEEAHTVFKAMRRHRVEPDLCSYTTMVLAY-VNASDMDGAEKFFRRIKEDGLKPNV 422
Query: 123 STYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFG-NTD 171
Y L K Y+K N+ + + ++ +RM QG+ PN+ + ++ G N+D
Sbjct: 423 VVYGTLMKGYSKLNNVERVMRVYERMRMQGVEPNQTIYTTIMDVHGRNSD 472
>Os08g0107700 Similar to Rf1 protein, mitochondrial precursor (PPR protein)
(Fertility restorer) (Restorer for CMS)
Length = 374
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%)
Query: 3 QVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMY 62
+F +L P T+NS+I+ KAR +KA VL +M + G PN +T L+ Y
Sbjct: 224 HLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGY 283
Query: 63 AYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSA 122
+ A +F + + + N ++ C NG MEA ++ DS++K+G P++
Sbjct: 284 CSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNS 343
Query: 123 STYKLLYKAYTKANDKKLIQKLLKRMNSQGI 153
+TY L Y + LL M GI
Sbjct: 344 ATYGTLLHGYATEGSLVKMHHLLDMMVRNGI 374
>Os05g0275000 Protein prenyltransferase domain containing protein
Length = 793
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%)
Query: 1 MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM 60
+E+ F+ + KP FNSM+ Y K L KA + D + + G P+ +T L+
Sbjct: 585 VEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMD 644
Query: 61 MYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP 120
MYA + A +I +L SSQ + S N +++ +C GL EA ++L +I G P
Sbjct: 645 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAP 704
Query: 121 SASTYKLLYKAY 132
TY L Y
Sbjct: 705 CVVTYHTLVGGY 716
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%)
Query: 1 MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM 60
M ++ + + RS P T+N+M+ GK + + VL+ M G + + T LI
Sbjct: 410 MLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLIS 469
Query: 61 MYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVP 120
Y C + A +++DE++SS L++ NA+L+ G A ++ ++K G P
Sbjct: 470 AYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKP 529
Query: 121 SASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPN 156
+ +Y LL + Y K + I+ + K + I P+
Sbjct: 530 NDQSYSLLLQCYAKGGNAAGIESIEKEVYVGTIFPS 565
>Os04g0351333 Protein prenyltransferase domain containing protein
Length = 740
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 5/176 (2%)
Query: 2 EQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMM 61
E + + ++ S P T++ +I K++ +KAE VL++M E G +PN +T LI
Sbjct: 103 ESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHG 162
Query: 62 YAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPS 121
Y+ + + ++F ++ S + + N+ + A +G EA + DS++ KG P
Sbjct: 163 YSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPD 222
Query: 122 ASTYKLLYKAYTKANDKKL--IQKLLKRMNSQGIVPNKKFF---LDALEAFGNTDK 172
+Y + Y A D L + + M ++GI PNK F ++A G DK
Sbjct: 223 IISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDK 278
>Os07g0548300 Similar to CRP1
Length = 661
Score = 69.3 bits (168), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Query: 11 SKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSR 70
S+ +P P F+ +I+ + +ARL + A +L +G P LI V+
Sbjct: 215 SRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAE 274
Query: 71 ARQIFDEL-VSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLY 129
A +F E ++ + + NA+L Y G A+Q+LD + + G P +TY LL
Sbjct: 275 AEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLV 334
Query: 130 KAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAF 167
AYT+A + + LLK M + G+ P+ F L F
Sbjct: 335 DAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGF 372
>Os06g0199100 Protein prenyltransferase domain containing protein
Length = 1283
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 4/188 (2%)
Query: 4 VFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYA 63
VF+ ++ S+ +P T+N+M++ +G+ ++AE + ++ E GF+P+ VT L+ +A
Sbjct: 155 VFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFA 214
Query: 64 YCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSAS 123
V R ++ +ELV + + N M+ Y G A L D + G P A
Sbjct: 215 KEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAV 274
Query: 124 TYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAF---GNTDKKPRTVPSK 180
TY +L + K + K+L+ M G+ P F + A+ G D RT
Sbjct: 275 TYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM 334
Query: 181 -NSASKPD 187
S KPD
Sbjct: 335 VESGVKPD 342
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 82/171 (47%)
Query: 2 EQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMM 61
E +FK L+ +P T+NS++ + K E+ E V +++ + GF+ + +T +I M
Sbjct: 188 ELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHM 247
Query: 62 YAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPS 121
Y + A ++DE+ + + ++D+ EA ++L+ + G P+
Sbjct: 248 YGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPT 307
Query: 122 ASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDK 172
T+ L AY K+ + ++ RM G+ P++ +L L+ F +D+
Sbjct: 308 LVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 358
>Os07g0300200 Protein prenyltransferase domain containing protein
Length = 1013
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 15 PTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQI 74
P T++ MI ++ EKA +L++MT G KPN LI Y VS A +I
Sbjct: 452 PNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEI 511
Query: 75 FDELVSSQNNVHLSSVNAMLDAYCMNGLPM---------EADQLLDSVIKKGAVPSASTY 125
FD+ ++ VN + D YC N L E+ + + ++G +P+ TY
Sbjct: 512 FDK---------MTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 562
Query: 126 KLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTD 171
L Y K D + ++L++RM G+ PN ++D LE++ +D
Sbjct: 563 SGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSD 608
>Os11g0607100 Tetratricopeptide-like helical domain containing protein
Length = 671
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 1 MEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIM 60
+ + F+ +L + P + + I K R ++A VL++M G KPN T LI
Sbjct: 235 VSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLID 294
Query: 61 MYAYCDCVSRARQIFDELVSSQN---NVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKG 117
RA ++F +L+ S + NVH +V M+ YC G A+ LL ++++G
Sbjct: 295 GLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTV--MIGGYCREGKLARAEMLLVRMVEQG 352
Query: 118 AVPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAF 167
P+ +TY L + K +L+ +M +G +PN + ++ F
Sbjct: 353 LKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGF 402
>Os08g0248400 Protein prenyltransferase domain containing protein
Length = 440
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%)
Query: 5 FKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAY 64
+ +L P T+N+++ KA+ +KA VL++M + G P+ +T ++ Y
Sbjct: 229 YHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCS 288
Query: 65 CDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSAST 124
A I +++ S + +++D C NG +EA ++LDS+IK+G P+ T
Sbjct: 289 SGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVIT 348
Query: 125 YKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFF 160
Y L Y ++ LL M GI P++ F
Sbjct: 349 YSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVF 384
>Os05g0583900 Protein prenyltransferase domain containing protein
Length = 467
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%)
Query: 15 PTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQI 74
P T+ +++ Y REK + ++M G +PN T CLI + RAR +
Sbjct: 71 PNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSL 130
Query: 75 FDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKAYTK 134
FDE+ ++ S N ++ C +G +A +LLD + +G PS T+ LL Y K
Sbjct: 131 FDEMPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGK 190
Query: 135 ANDKKLIQKLLKRMNSQGIVPN 156
A +M + G P+
Sbjct: 191 AGKMSNALPFFNQMKAAGFQPS 212
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%)
Query: 14 KPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQ 73
+P+ T+N +I + +AR +A L M E G +P VT LI +A + + +A +
Sbjct: 210 QPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENHMGKAFE 269
Query: 74 IFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLYKAYT 133
I + + V + ++ A CM G +A +L S+ +KG PS Y ++ Y
Sbjct: 270 ILAGMEKAGLEVDAHTYGVLVRALCMEGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYG 329
Query: 134 KANDKKLIQKLLKRMNSQGIVPN 156
+ KL+ M +G++PN
Sbjct: 330 REGSSYKALKLIMEMRQKGLIPN 352
>Os08g0110200 Similar to Fertility restorer
Length = 798
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%)
Query: 10 RSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVS 69
R P ++ ++I + +KA C+ D+M + G PN +T CL+ Y
Sbjct: 199 RGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPK 258
Query: 70 RARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSASTYKLLY 129
A IF ++ + + N ++ C NG MEA ++ DS++KKG P +S Y L
Sbjct: 259 EAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLL 318
Query: 130 KAYTKANDKKLIQKLLKRMNSQGIVPNKKFF 160
Y + +LL M G P+ F
Sbjct: 319 HGYATEGYLVQMHQLLDVMVRNGTQPDHYIF 349
>Os01g0153200 Ribosomal protein S8 family protein
Length = 1139
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 3 QVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMY 62
++F ++ S P TFN MI Y KA + D+M EMG KP+ T LI
Sbjct: 499 RLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGL 558
Query: 63 AYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAVPSA 122
VS+A + +L +S ++ S+ A+L + G E L D + +G
Sbjct: 559 CLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDL 618
Query: 123 STYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFF---LDAL 164
++ ++ A K +DK+ L + M QG+ P+ F+ +DAL
Sbjct: 619 VSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDAL 663
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,430,451
Number of extensions: 235449
Number of successful extensions: 3270
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 3334
Number of HSP's successfully gapped: 27
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)