Os05g0275000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0275000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.59 | 0.403 | 11.7 | 0.331 | 0.887 | -1.12 | -0.467 | 0.363 | -0.508 | 18.6 | 20 | 77 | -- | -- |
| 74.14 | 0.401 | 11.7 | 0.317 | 0.894 | -1.07 | -0.45 | -- | -0.5 | 18.4 | 18.83 | 73 | -- | -- |
| 74.08 | 0.401 | 11.7 | 0.352 | 0.894 | -1.12 | -- | 0.368 | -0.512 | 18.6 | 18.47 | 77 | -- | -- |
| 74.54 | 0.402 | 11.7 | 0.335 | 0.895 | -1.1 | -- | -- | -0.509 | 18.6 | 18.34 | 74 | -- | -- |
| 94.23 | 0.452 | 11.7 | 0.279 | -- | -1.22 | -- | 0.225 | -0.499 | -- | 10.04 | 304 | -- | -- |
| 94.71 | 0.456 | 11.7 | 0.38 | 1.43 | -- | -0.397 | -- | -0.433 | 15.1 | -- | -- | -- | -- |
| 95.23 | 0.457 | 11.7 | 0.372 | 1.42 | -- | -- | -- | -0.435 | 15.1 | -- | -- | -- | -- |
| 94.31 | 0.452 | 11.7 | 0.352 | -- | -1.22 | -- | -- | -0.494 | -- | 10 | 294 | -- | -- |
| 77.45 | 0.41 | 11.7 | -- | 0.889 | -1.13 | -- | -- | -0.547 | 18.7 | 18.6 | 74 | -- | -- |
| 210.62 | 0.678 | 11.7 | 0.311 | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
| 98.87 | 0.465 | 11.7 | -- | 1.42 | -- | -- | -- | -0.476 | 15.1 | -- | -- | -- | -- |
| 97.36 | 0.46 | 11.7 | -- | -- | -1.24 | -- | -- | -0.535 | -- | 12.03 | 287 | -- | -- |
| 213.17 | 0.681 | 11.7 | -- | -- | -- | -- | -- | -0.507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.37 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 5 | 69.52 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 21 |
| 7 | 69.63 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 11 | 69.93 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 16 | 70.10 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 1 | 22 |
| 27 | 70.65 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 35 | 70.89 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 48 | 71.18 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 11 |
| 50 | 71.24 | radiation | 10.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 61 | 71.52 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 158 | 73.37 | radiation | 10.0 | 10 | < th | dose dependent | sin | 1 | NA |
| 167 | 73.46 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 169 | 73.52 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 13 |
| 174 | 73.57 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 181 | 73.61 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 11 |
| 199 | 73.82 | wind | 5.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 210 | 73.91 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 219 | 74.05 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 14 |
| 228 | 74.18 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 248 | 74.38 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 12 |
| 269 | 74.53 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 270 | 74.54 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 271 | 74.55 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 286 | 74.65 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 288 | 74.67 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 294 | 74.70 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 304 | 74.76 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 305 | 74.77 | radiation | 1.0 | 90 | < th | dose independent | sin | 1 | NA |
| 318 | 74.85 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 322 | 74.88 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 326 | 74.89 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 328 | 74.89 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 331 | 74.91 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 359 | 75.05 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 433 | 75.43 | radiation | 20.0 | 10 | < th | dose independent | rect. | 1 | 14 |
| 434 | 75.43 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 443 | 75.47 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 448 | 75.49 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 10 |
| 454 | 75.51 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 459 | 75.53 | wind | 9.0 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 482 | 75.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 486 | 75.65 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 501 | 75.70 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 559 | 75.91 | wind | 5.0 | 90 | < th | dose independent | rect. | 22 | 5 |
| 560 | 75.91 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 566 | 75.93 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 575 | 75.98 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 606 | 76.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 14 |
| 608 | 76.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 614 | 76.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 3 |
| 616 | 76.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 617 | 76.17 | humidity | 80.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 620 | 76.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 667 | 76.35 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 668 | 76.35 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 22 | 5 |
| 684 | 76.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 3 |
| 688 | 76.40 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 689 | 76.40 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 690 | 76.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 693 | 76.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 694 | 76.40 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 3 |
| 723 | 76.48 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 8 |
| 743 | 76.57 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 753 | 76.59 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 1 | 9 |
| 756 | 76.60 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 788 | 76.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 789 | 76.68 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 19 |
| 802 | 76.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 830 | 76.83 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 837 | 76.85 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 841 | 76.86 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 21 |
| 842 | 76.86 | radiation | 10.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 929 | 77.11 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 3 |
| 933 | 77.12 | humidity | 80.0 | 90 | > th | dose independent | rect. | 22 | 5 |
| 938 | 77.14 | radiation | 10.0 | 90 | > th | dose independent | sin | 3 | NA |
| 940 | 77.14 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 951 | 77.17 | wind | 1.0 | 270 | > th | dose independent | rect. | 21 | 3 |
| 970 | 77.22 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 975 | 77.23 | radiation | 10.0 | 90 | < th | dose independent | no | NA | NA |