FiT-DB / Search/ Help/ Sample detail

Os07g0548300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CRP1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0228) R2 : 0.862
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.49 (0.071) R2dC : 0.207 R2C : 0.521
β3 : 2.17 (0.0817) R2dE : 0.331 R2E : 0.646
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.197 (0.0481) R2dN8 : 0.00661 R2N8 : 0.0102
σ : 0.429
deviance : 84.87
__
_____
C
peak time of C : 15
E
wheather : precipitation
threshold : 0.7543
memory length : 237
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.34
open length of G : 20.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.11 0.41 12.5 0.46 1.45 2.15 -1.07 0.857 -0.143 14.9 0.8835 251 5.22 20.2
76.96 0.409 12.5 0.507 1.45 2.23 -0.824 -- -0.142 14.8 0.9849 238 5.28 20.2
79.29 0.415 12.5 0.445 1.46 2.12 -- 0.507 -0.116 14.9 1 245 5.27 20.3
78.75 0.413 12.5 0.473 1.45 2.23 -- -- -0.146 14.9 0.9995 239 5.3 20.2
119.49 0.509 12.5 0.502 -- 3 -- -0.416 -0.117 -- 3.687 350 5.1 17.5
171.25 0.614 12.5 0.377 2.84 -- -0.232 -- -0.19 16.2 -- -- -- --
171.41 0.613 12.5 0.374 2.83 -- -- -- -0.191 16.2 -- -- -- --
119.76 0.51 12.5 0.461 -- 3.01 -- -- -0.136 -- 4.465 357 5.04 17.6
84.87 0.429 12.5 -- 1.49 2.17 -- -- -0.197 15 0.7543 237 5.34 20.2
606.86 1.15 12.5 0.26 -- -- -- -- -0.267 -- -- -- -- --
175.1 0.619 12.5 -- 2.83 -- -- -- -0.233 16.2 -- -- -- --
125.36 0.521 12.5 -- -- 3 -- -- -0.187 -- 4.91 358 5.03 17.6
608.64 1.15 12.5 -- -- -- -- -- -0.296 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.84 radiation 30.0 90 < th dose dependent rect. 3 4
3 78.12 precipitation 0.1 270 < th dose independent rect. 5 20
4 78.12 precipitation 0.1 270 < th dose dependent rect. 5 20
6 78.61 humidity 70.0 90 > th dose independent rect. 3 4
7 78.63 radiation 20.0 90 < th dose independent rect. 3 4
8 78.72 radiation 1.0 270 < th dose dependent rect. 1 4
10 78.86 radiation 1.0 270 < th dose independent rect. 1 4
16 79.00 temperature 10.0 270 > th dose independent rect. 1 4
18 79.00 temperature 30.0 270 < th dose independent rect. 1 4
19 79.00 humidity 50.0 270 > th dose independent rect. 1 4
22 79.00 atmosphere 995.0 270 > th dose independent rect. 1 4
23 79.00 atmosphere 1010.0 270 < th dose independent rect. 1 4
28 79.00 temperature 10.0 270 > th dose independent rect. 5 20
29 79.03 wind 9.0 270 < th dose independent rect. 1 4
31 79.10 wind 9.0 90 < th dose independent rect. 3 4
32 79.10 temperature 10.0 90 > th dose independent rect. 3 4
34 79.10 temperature 30.0 90 < th dose independent rect. 3 4
35 79.10 humidity 50.0 90 > th dose independent rect. 3 4
37 79.10 atmosphere 995.0 90 > th dose independent rect. 3 4
38 79.10 atmosphere 1015.0 90 < th dose independent rect. 3 4
40 79.10 temperature 10.0 90 > th dose independent rect. 7 20
41 79.13 precipitation 0.1 90 < th dose independent rect. 3 4
42 79.13 precipitation 0.1 90 < th dose dependent rect. 3 4
43 79.21 wind 9.0 270 < th dose independent rect. 5 20
45 79.47 precipitation 0.1 270 < th dose independent rect. 1 4
46 79.47 precipitation 0.1 270 < th dose dependent rect. 1 4
48 79.64 wind 9.0 90 < th dose independent rect. 7 20
50 80.02 wind 9.0 90 < th dose dependent rect. 3 4
51 80.33 precipitation 0.1 90 < th dose independent rect. 7 20
52 80.33 precipitation 0.1 90 < th dose dependent rect. 7 20
53 80.53 humidity 50.0 90 > th dose dependent rect. 3 4
83 81.61 temperature 10.0 270 > th dose dependent rect. 2 3
94 82.66 humidity 50.0 270 > th dose dependent rect. 1 4
130 84.66 wind 9.0 270 < th dose dependent rect. 1 4
136 85.15 radiation 1.0 270 < th dose dependent rect. 1 12
143 85.43 radiation 1.0 270 < th dose independent rect. 1 12
152 86.33 wind 1.0 270 > th dose independent rect. 1 4
156 86.52 radiation 10.0 10 < th dose independent rect. 3 5
160 86.75 radiation 20.0 90 < th dose dependent rect. 3 8
173 87.51 atmosphere 995.0 90 > th dose independent rect. 7 20
180 87.61 wind 9.0 270 < th dose independent rect. 3 1
181 87.61 temperature 10.0 270 > th dose independent rect. 3 1
183 87.61 temperature 30.0 270 < th dose independent rect. 3 1
184 87.61 humidity 50.0 270 > th dose independent rect. 3 1
187 87.61 atmosphere 995.0 270 > th dose independent rect. 3 1
188 87.61 atmosphere 1010.0 270 < th dose independent rect. 3 1
190 87.61 radiation 1.0 270 < th dose independent rect. 3 1
195 87.61 temperature 10.0 270 > th dose independent rect. 4 23
196 87.61 radiation 1.0 270 < th dose dependent rect. 3 1
202 87.70 temperature 10.0 270 > th dose dependent rect. 3 1
204 87.72 precipitation 0.1 10 < th dose independent rect. 7 20
205 87.72 precipitation 0.1 10 < th dose dependent rect. 7 20
228 87.77 wind 9.0 10 < th dose independent rect. 3 4
229 87.77 temperature 10.0 10 > th dose independent rect. 3 4
231 87.77 temperature 30.0 10 < th dose independent rect. 3 4
232 87.77 humidity 50.0 10 > th dose independent rect. 3 4
235 87.77 atmosphere 995.0 10 > th dose independent rect. 3 4
236 87.77 atmosphere 1015.0 10 < th dose independent rect. 3 4
240 87.77 temperature 10.0 10 > th dose independent rect. 7 20
296 88.53 wind 9.0 10 < th dose independent rect. 7 20
323 88.81 temperature 10.0 10 > th dose dependent rect. 3 4
352 89.44 atmosphere 995.0 270 > th dose independent rect. 5 20
357 89.77 wind 1.0 270 > th dose independent rect. 2 2
368 90.01 humidity 50.0 270 > th dose dependent rect. 3 1
382 90.34 atmosphere 995.0 270 > th dose dependent rect. 1 4
401 90.80 wind 9.0 270 < th dose dependent rect. 3 1
416 91.18 wind 1.0 270 > th dose independent rect. 5 20
478 92.83 wind 9.0 1440 < th dose independent rect. 4 4
479 92.83 temperature 10.0 1440 > th dose independent rect. 4 4
482 92.83 temperature 30.0 1440 < th dose independent rect. 4 4
486 92.83 humidity 50.0 1440 > th dose independent rect. 4 4
491 92.83 atmosphere 995.0 1440 > th dose independent rect. 4 4
492 92.83 atmosphere 1015.0 1440 < th dose independent rect. 4 4
493 92.83 temperature 10.0 1440 > th dose independent rect. 8 20
496 92.86 wind 1.0 90 > th dose independent rect. 7 20
513 93.33 atmosphere 995.0 10 > th dose independent rect. 7 20
534 93.69 radiation 1.0 270 < th dose dependent sin 3 NA
574 94.23 atmosphere 995.0 10 > th dose dependent rect. 3 4
579 94.42 wind 9.0 270 < th dose independent rect. 20 14
588 94.60 temperature 10.0 270 > th dose independent rect. 10 10
589 94.60 atmosphere 1015.0 270 < th dose independent rect. 10 10
590 94.60 temperature 10.0 270 > th dose independent rect. 20 14
591 94.60 atmosphere 995.0 270 > th dose independent rect. 20 14
615 94.72 humidity 50.0 270 > th dose independent rect. 20 14
666 95.76 precipitation 0.1 270 < th dose independent rect. 20 14
667 95.76 precipitation 0.1 270 < th dose dependent rect. 20 14
671 95.80 atmosphere 1015.0 90 < th dose independent rect. 7 20
686 96.08 atmosphere 1015.0 90 < th dose dependent rect. 3 4
756 96.64 wind 9.0 270 < th dose independent rect. 10 10
871 98.01 radiation 1.0 270 < th dose independent sin 4 NA
883 98.09 atmosphere 1015.0 270 < th dose independent rect. 5 20
969 99.21 precipitation 0.1 270 < th dose independent rect. 10 10
970 99.21 precipitation 0.1 270 < th dose dependent rect. 10 10
972 99.26 radiation 30.0 270 < th dose independent rect. 15 14
994 99.68 temperature 30.0 90 < th dose dependent rect. 3 4