Os11g0607100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os11g0607100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.83 | 0.381 | 7.84 | 0.635 | 1.1 | 0.503 | 0.982 | 3.58 | -0.585 | 13 | 11.61 | 666 | -- | -- |
| 67.01 | 0.381 | 7.9 | 0.0404 | 0.898 | 0.857 | 0.469 | -- | -0.703 | 12.3 | 25.8 | 259 | -- | -- |
| 66.54 | 0.38 | 7.85 | 0.627 | 0.988 | 0.559 | -- | 3.77 | -0.594 | 12.8 | 14.13 | 334 | -- | -- |
| 67.8 | 0.383 | 7.9 | 0.0374 | 0.888 | 0.884 | -- | -- | -0.704 | 12.2 | 25.8 | 254 | -- | -- |
| 105.65 | 0.479 | 7.91 | 0.237 | -- | 1.6 | -- | 2.97 | -0.795 | -- | 9.786 | 8 | -- | -- |
| 78.75 | 0.416 | 7.9 | 0.15 | 1.08 | -- | 0.757 | -- | -0.667 | 13.6 | -- | -- | -- | -- |
| 80.99 | 0.421 | 7.9 | 0.174 | 1.08 | -- | -- | -- | -0.663 | 13.5 | -- | -- | -- | -- |
| 96.48 | 0.457 | 7.94 | -0.0842 | -- | 1.5 | -- | -- | -0.825 | -- | 24.5 | 12 | -- | -- |
| 67.83 | 0.384 | 7.9 | -- | 0.887 | 0.894 | -- | -- | -0.706 | 12.2 | 25.8 | 254 | -- | -- |
| 152.53 | 0.577 | 7.91 | 0.131 | -- | -- | -- | -- | -0.686 | -- | -- | -- | -- | -- |
| 81.78 | 0.423 | 7.9 | -- | 1.08 | -- | -- | -- | -0.682 | 13.5 | -- | -- | -- | -- |
| 96.66 | 0.458 | 7.94 | -- | -- | 1.49 | -- | -- | -0.818 | -- | 24.5 | 12 | -- | -- |
| 152.98 | 0.577 | 7.92 | -- | -- | -- | -- | -- | -0.701 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.51 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 2 | 61.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 3 | 62.24 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 18 |
| 14 | 63.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 17 | 63.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 18 | 63.51 | temperature | 15 | 90 | > th | dose independent | rect. | 18 | 9 |
| 19 | 63.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 24 | 63.76 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 29 | 63.89 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 31 | 63.92 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 32 | 63.92 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 35 | 63.95 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 48 | 64.04 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 52 | 64.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 61 | 64.14 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 13 |
| 70 | 64.19 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 18 | 9 |
| 71 | 64.21 | radiation | 1 | 90 | < th | dose independent | rect. | 11 | 16 |
| 80 | 64.27 | wind | 7 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 84 | 64.28 | radiation | 10 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 98 | 64.36 | temperature | 30 | 90 | < th | dose independent | rect. | 17 | 10 |
| 109 | 64.40 | radiation | 1 | 90 | < th | dose independent | rect. | 15 | 12 |
| 113 | 64.41 | wind | 7 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 121 | 64.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 122 | 64.44 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 136 | 64.49 | radiation | 10 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 163 | 64.58 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 170 | 64.62 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 10 |
| 185 | 64.68 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 194 | 64.70 | wind | 9 | 14400 | > th | dose dependent | sin | 10 | NA |
| 196 | 64.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 197 | 64.71 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 248 | 64.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 255 | 64.85 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 274 | 64.90 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 276 | 64.90 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 290 | 64.94 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 297 | 64.95 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 298 | 64.95 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 305 | 64.97 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 322 | 65.00 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 340 | 65.03 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 363 | 65.09 | temperature | 15 | 270 | > th | dose dependent | sin | 0 | NA |
| 397 | 65.18 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 411 | 65.20 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 428 | 65.25 | wind | 5 | 14400 | > th | dose dependent | sin | 10 | NA |
| 438 | 65.28 | wind | 5 | 14400 | > th | dose independent | sin | 9 | NA |
| 455 | 65.31 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 12 |
| 470 | 65.34 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 14 |
| 476 | 65.35 | temperature | 15 | 90 | > th | dose independent | rect. | 9 | 18 |
| 492 | 65.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 619 | 65.61 | wind | 9 | 14400 | > th | dose independent | sin | 10 | NA |
| 631 | 65.62 | wind | 5 | 14400 | < th | dose independent | sin | 9 | NA |
| 641 | 65.63 | wind | 9 | 14400 | < th | dose independent | sin | 10 | NA |
| 671 | 65.68 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 678 | 65.69 | wind | 7 | 90 | < th | dose independent | rect. | 3 | 15 |
| 680 | 65.69 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 699 | 65.73 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 5 | 22 |
| 730 | 65.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 750 | 65.81 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 766 | 65.84 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 11 |
| 799 | 65.89 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 804 | 65.90 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 907 | 66.01 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 18 | 9 |
| 921 | 66.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |