Os08g0191900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os08g0191900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.22 | 0.704 | 10.8 | 0.638 | 4.01 | 2.56 | -0.938 | 2.5 | -0.182 | 17.3 | 8.345 | 245 | 5.39 | 22 |
| 236.01 | 0.716 | 10.8 | 0.81 | 4.16 | 2.52 | -0.215 | -- | -0.0689 | 17.3 | 8.426 | 243 | 5.42 | 22 |
| 225.67 | 0.7 | 10.8 | 0.664 | 4.03 | 2.54 | -- | 1.95 | -0.184 | 17.3 | 8.329 | 243 | 5.38 | 22.1 |
| 234.38 | 0.713 | 10.8 | 0.764 | 4.02 | 2.56 | -- | -- | -0.176 | 17.3 | 8.401 | 244 | 5.4 | 22 |
| 480.52 | 1.02 | 10.7 | 0.445 | -- | 5.01 | -- | 0.824 | -0.442 | -- | 46.47 | 363 | 4.84 | 20.5 |
| 422.19 | 0.963 | 10.8 | 0.84 | 5.71 | -- | 1.03 | -- | -0.277 | 17.5 | -- | -- | -- | -- |
| 424.79 | 0.965 | 10.8 | 0.836 | 5.72 | -- | -- | -- | -0.273 | 17.5 | -- | -- | -- | -- |
| 307.79 | 0.817 | 10.6 | 1.02 | -- | 6.01 | -- | -- | -0.316 | -- | 8.5 | 458 | 6.15 | 15.6 |
| 249.72 | 0.736 | 10.8 | -- | 4.04 | 2.54 | -- | -- | -0.207 | 17.3 | 8.4 | 244 | 5.43 | 22 |
| 2125.9 | 2.15 | 10.8 | 0.648 | -- | -- | -- | -- | -0.412 | -- | -- | -- | -- | -- |
| 443.23 | 0.985 | 10.9 | -- | 5.71 | -- | -- | -- | -0.366 | 17.5 | -- | -- | -- | -- |
| 314.05 | 0.825 | 10.7 | -- | -- | 5.96 | -- | -- | -0.351 | -- | 8.076 | 465 | 6.16 | 15.5 |
| 2136.97 | 2.16 | 10.8 | -- | -- | -- | -- | -- | -0.484 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 2 | 236.28 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 4 | 237.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 7 | 239.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 8 | 239.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 14 | 241.01 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 22 | 242.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 23 | 242.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 27 | 242.48 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 31 | 242.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 33 | 242.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 34 | 242.63 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 37 | 242.63 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 38 | 242.63 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 39 | 242.63 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 42 | 242.63 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 57 | 242.79 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 61 | 243.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 63 | 243.04 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 66 | 243.27 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 80 | 244.47 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 4 |
| 83 | 244.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 4 |
| 84 | 244.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 4 |
| 88 | 244.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 4 |
| 90 | 244.82 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 4 |
| 91 | 244.82 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 4 |
| 93 | 244.82 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 4 |
| 94 | 244.82 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 4 |
| 95 | 244.82 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 114 | 245.65 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 20 |
| 115 | 245.65 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 20 |
| 122 | 246.15 | radiation | 40.0 | 30 | < th | dose independent | rect. | 4 | 4 |
| 303 | 256.64 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 398 | 262.96 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 408 | 263.47 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 429 | 264.60 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 4 | 4 |
| 521 | 268.67 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 527 | 268.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 557 | 269.54 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 595 | 270.78 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 642 | 272.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 645 | 272.07 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 647 | 272.18 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 662 | 272.42 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 664 | 272.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 687 | 273.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 688 | 273.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 691 | 273.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 19 |
| 706 | 274.22 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 719 | 274.76 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 720 | 274.76 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 723 | 274.76 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 725 | 274.76 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 726 | 274.76 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 727 | 274.76 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 770 | 276.42 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 783 | 277.05 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 796 | 277.38 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 20 |
| 809 | 278.06 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 861 | 279.68 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 865 | 279.77 | temperature | 15.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 870 | 280.02 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 876 | 280.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 877 | 280.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 898 | 280.37 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 954 | 281.47 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 978 | 282.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 992 | 282.37 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 2 |