Os06g0199100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0199100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.21 | 0.41 | 10.2 | 0.664 | 3.17 | -1.15 | 0.288 | 0.523 | 0.000504 | 16.5 | 22 | 2080 | -- | -- |
| 77.22 | 0.409 | 10.2 | 0.611 | 3.15 | -1.21 | 0.211 | -- | -0.0108 | 16.5 | 22 | 2120 | -- | -- |
| 76.43 | 0.407 | 10.2 | 0.669 | 3.17 | -1.15 | -- | 0.532 | 0.00157 | 16.5 | 22 | 2079 | -- | -- |
| 77.08 | 0.409 | 10.2 | 0.506 | 3.17 | -1.16 | -- | -- | -0.0423 | 16.5 | 22 | 2077 | -- | -- |
| 568.21 | 1.11 | 10.3 | 0.791 | -- | -1.38 | -- | 1.01 | -0.218 | -- | 24.1 | 2660 | -- | -- |
| 122.18 | 0.518 | 10.3 | -0.00121 | 3.17 | -- | 0.177 | -- | -0.424 | 16.4 | -- | -- | -- | -- |
| 122.27 | 0.518 | 10.3 | 0.000163 | 3.17 | -- | -- | -- | -0.423 | 16.4 | -- | -- | -- | -- |
| 558.39 | 1.1 | 10.2 | 0.58 | -- | -1.72 | -- | -- | 0.0704 | -- | 24.11 | 2669 | -- | -- |
| 82.47 | 0.423 | 10.3 | -- | 3.17 | -1.01 | -- | -- | -0.13 | 16.5 | 22.1 | 1986 | -- | -- |
| 659.97 | 1.2 | 10.3 | -0.124 | -- | -- | -- | -- | -0.506 | -- | -- | -- | -- | -- |
| 122.27 | 0.517 | 10.3 | -- | 3.17 | -- | -- | -- | -0.423 | 16.4 | -- | -- | -- | -- |
| 566.25 | 1.11 | 10.2 | -- | -- | -1.56 | -- | -- | -0.041 | -- | 24.17 | 2670 | -- | -- |
| 660.37 | 1.2 | 10.3 | -- | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 5 | 71.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 7 | 71.93 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 18 |
| 8 | 72.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 9 | 72.14 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 26 | 73.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 36 | 73.32 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 20 |
| 84 | 74.73 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 106 | 75.24 | temperature | 30 | 10 | < th | dose dependent | sin | 7 | NA |
| 161 | 76.31 | temperature | 10 | 10 | > th | dose dependent | sin | 8 | NA |
| 188 | 76.74 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 15 |
| 205 | 77.04 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 17 |
| 277 | 77.93 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 7 |
| 304 | 78.28 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 332 | 78.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 351 | 78.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 358 | 78.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 434 | 80.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 457 | 80.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 483 | 80.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 14 |
| 531 | 80.43 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 579 | 80.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 592 | 80.57 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 649 | 80.63 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 654 | 80.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 863 | 80.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |