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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0107700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0215) R2 : 0.331
β1 : -0.215 (0.0821) R2dD : 0.0111 R2D : -0.0286
β2 : -- (--) R2dC : -- R2C : --
β3 : 9.83 (0.695) R2dE : 1.84 R2E : -0.941
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -60.8 (5.19) R2dD*E : 1.29 R2D*E : -1.51
γ1 : 0.0285 (0.0454) R2dN8 : 0.000768 R2N8 : -0.00707
σ : 0.397
deviance : 72.73
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.98
memory length : 9
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.9
open length of G : 0.912

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.32 0.402 2.9 -0.204 0.0318 9.37 -0.14 -57.3 0.0281 6.68 24.82 9 21.1 1.07
95.93 0.46 2.87 0.0945 0.0328 2.38 -0.0448 -- 0.0197 3.59 24.82 9 21.1 1.07
73.04 0.401 2.9 -0.217 0.0343 9.73 -- -60.3 0.0278 5.06 24.89 9 21.2 0.817
94.53 0.453 2.86 0.0949 0.0304 2.32 -- -- 0.021 4.65 24.04 10 21.6 1.33
72.73 0.397 2.9 -0.215 -- 9.83 -- -60.8 0.0285 -- 24.98 9 21.9 0.912
108.02 0.487 2.87 0.119 0.066 -- 0.0535 -- 0.00441 23.4 -- -- -- --
108.03 0.487 2.87 0.117 0.0657 -- -- -- 0.00411 23.6 -- -- -- --
94.57 0.453 2.87 0.0976 -- 2.27 -- -- 0.0111 -- 24.08 10 21.6 1.32
94.75 0.453 2.86 -- 0.0255 2.29 -- -- 0.0106 4.94 24.11 10 21.5 1.34
108.3 0.486 2.87 0.119 -- -- -- -- 0.00487 -- -- -- -- --
108.39 0.487 2.87 -- 0.0671 -- -- -- -0.00892 23.7 -- -- -- --
94.78 0.453 2.87 -- -- 2.29 -- -- -0.00763 -- 24.07 10 21.4 1.49
108.67 0.487 2.87 -- -- -- -- -- -0.00832 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.80 temperature 25.0 10 > th dose dependent rect. 21 1
2 81.29 temperature 25.0 30 > th dose independent rect. 21 1
8 94.23 precipitation 0.1 90 > th dose independent rect. 5 1
9 94.23 precipitation 0.1 90 > th dose dependent rect. 5 1
15 97.02 humidity 70.0 270 < th dose independent rect. 18 1
24 98.83 humidity 70.0 270 < th dose dependent rect. 18 1
26 99.83 atmosphere 1005.0 90 < th dose dependent rect. 20 1
29 100.36 humidity 90.0 10 < th dose independent rect. 21 1
30 100.39 humidity 90.0 90 < th dose independent rect. 21 1
34 100.62 wind 3.0 10 > th dose independent rect. 6 1
52 101.42 temperature 25.0 10 > th dose dependent rect. 21 8
55 101.51 wind 1.0 90 < th dose dependent rect. 5 1
64 101.71 temperature 30.0 270 > th dose dependent rect. 18 1
94 101.93 wind 3.0 10 < th dose independent rect. 21 1
135 102.32 temperature 25.0 90 > th dose dependent rect. 20 11
172 102.54 humidity 70.0 270 < th dose independent rect. 18 13
175 102.57 temperature 25.0 90 > th dose dependent rect. 20 7
195 102.70 wind 5.0 270 > th dose dependent rect. 3 1
219 102.94 atmosphere 1015.0 90 < th dose independent rect. 22 23
222 102.96 humidity 90.0 90 < th dose dependent rect. 21 1
230 103.03 humidity 90.0 10 < th dose dependent rect. 21 2
231 103.05 wind 5.0 270 > th dose independent rect. 3 1
240 103.11 wind 5.0 10 < th dose dependent rect. 21 2
251 103.16 atmosphere 1015.0 10 < th dose independent rect. 23 22
264 103.27 wind 5.0 90 < th dose independent rect. 21 1
268 103.28 precipitation 0.1 270 > th dose dependent sin 6 NA
277 103.36 atmosphere 995.0 90 > th dose independent rect. 22 23
290 103.44 humidity 70.0 270 < th dose independent rect. 18 15
300 103.51 wind 5.0 90 < th dose dependent rect. 21 1
322 103.65 precipitation 0.1 270 > th dose independent sin 5 NA
323 103.65 precipitation 0.1 270 < th dose independent sin 5 NA
325 103.65 precipitation 0.1 270 < th dose dependent sin 5 NA
333 103.67 atmosphere 995.0 10 > th dose independent rect. 23 22
337 103.68 humidity 90.0 270 < th dose dependent rect. 18 4
352 103.76 wind 1.0 90 < th dose independent rect. 5 1
364 103.81 atmosphere 1000.0 90 > th dose independent rect. 21 1
380 103.91 wind 1.0 90 > th dose independent rect. 21 1
406 103.94 humidity 80.0 270 < th dose dependent rect. 18 15
418 104.01 atmosphere 1000.0 10 > th dose independent rect. 21 2
459 104.14 precipitation 0.1 720 > th dose dependent rect. 18 1
460 104.15 atmosphere 1005.0 90 < th dose independent rect. 20 1
462 104.16 atmosphere 1015.0 720 < th dose independent rect. 12 23
469 104.21 atmosphere 1015.0 30 < th dose independent rect. 3 23
473 104.21 atmosphere 1015.0 30 < th dose dependent rect. 21 2
485 104.27 temperature 25.0 90 > th dose independent rect. 20 10
493 104.30 precipitation 0.1 90 < th dose independent rect. 21 1
494 104.30 precipitation 0.1 90 < th dose dependent rect. 21 1
499 104.32 atmosphere 1015.0 720 < th dose independent rect. 7 17
514 104.37 atmosphere 1015.0 720 < th dose independent rect. 13 21
518 104.39 temperature 10.0 90 > th dose independent rect. 21 1
520 104.39 temperature 30.0 90 < th dose independent rect. 21 1
521 104.39 humidity 50.0 90 > th dose independent rect. 21 1
527 104.39 radiation 1.0 90 < th dose independent rect. 21 1
533 104.39 precipitation 0.1 10 < th dose independent rect. 21 2
534 104.39 atmosphere 1015.0 720 < th dose independent rect. 22 17
535 104.39 temperature 10.0 90 > th dose independent rect. 22 23
537 104.39 radiation 1.0 90 < th dose dependent rect. 21 1
542 104.39 precipitation 0.1 10 < th dose dependent rect. 21 2
552 104.43 humidity 60.0 1440 > th dose independent rect. 24 9
556 104.44 precipitation 0.1 720 > th dose independent rect. 18 1
558 104.44 radiation 10.0 14400 < th dose dependent rect. 22 2
580 104.51 temperature 10.0 10 > th dose independent rect. 21 2
582 104.51 temperature 30.0 10 < th dose independent rect. 21 2
583 104.51 humidity 50.0 10 > th dose independent rect. 21 2
587 104.51 atmosphere 1010.0 10 < th dose independent rect. 21 2
589 104.51 radiation 1.0 10 < th dose independent rect. 21 2
594 104.51 temperature 10.0 10 > th dose independent rect. 23 22
596 104.51 radiation 1.0 10 < th dose dependent rect. 21 2
627 104.54 temperature 10.0 1440 > th dose independent rect. 22 2
630 104.54 temperature 30.0 1440 < th dose independent rect. 22 2
634 104.54 humidity 50.0 1440 > th dose independent rect. 22 2
642 104.54 atmosphere 995.0 1440 > th dose independent rect. 22 2
643 104.54 radiation 1.0 1440 < th dose independent rect. 22 2
663 104.54 temperature 10.0 1440 > th dose independent rect. 24 22
666 104.54 radiation 1.0 1440 < th dose dependent rect. 22 2
685 104.59 wind 9.0 90 < th dose independent rect. 22 23
697 104.62 humidity 60.0 30 > th dose independent rect. 23 22
713 104.66 atmosphere 1015.0 720 < th dose independent rect. 16 8
727 104.69 temperature 25.0 10 > th dose independent rect. 21 8
728 104.69 atmosphere 1015.0 720 < th dose independent rect. 12 16
733 104.71 atmosphere 1015.0 90 < th dose independent rect. 23 12
742 104.73 atmosphere 1015.0 720 < th dose independent rect. 21 13
745 104.74 wind 3.0 10 < th dose independent rect. 17 6
758 104.77 precipitation 0.1 1440 < th dose independent rect. 22 2
760 104.77 precipitation 0.1 1440 < th dose dependent rect. 22 2
778 104.81 humidity 60.0 1440 < th dose independent rect. 8 1
799 104.82 precipitation 0.1 30 < th dose independent rect. 23 22
802 104.82 precipitation 0.1 30 < th dose dependent rect. 23 22
821 104.87 humidity 60.0 1440 > th dose independent rect. 8 1
828 104.88 temperature 30.0 270 > th dose independent rect. 18 1
847 104.89 atmosphere 1015.0 720 < th dose independent rect. 17 17
849 104.89 humidity 60.0 1440 < th dose dependent rect. 8 1
851 104.89 atmosphere 995.0 90 > th dose dependent rect. 21 1
877 104.92 atmosphere 1015.0 720 < th dose independent rect. 21 22
881 104.93 wind 1.0 30 > th dose independent rect. 23 22
942 104.97 humidity 60.0 1440 > th dose independent rect. 4 5
943 104.97 atmosphere 1015.0 720 < th dose independent rect. 19 15
990 105.01 atmosphere 1015.0 720 < th dose independent rect. 23 1
991 105.01 atmosphere 1015.0 720 < th dose independent rect. 22 7
995 105.02 atmosphere 1015.0 720 < th dose independent rect. 22 3