Os07g0300200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os07g0300200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 69.69 | 0.392 | 5.89 | 0.922 | 0.327 | -0.624 | 0.446 | 2.24 | 0.239 | 0.284 | 19.1 | 74 | -- | -- |
| 73.08 | 0.401 | 5.94 | 0.521 | 0.311 | -0.654 | -0.117 | -- | 0.129 | 0.684 | 15.19 | 56 | -- | -- |
| 70.35 | 0.391 | 5.9 | 0.856 | 0.321 | -0.646 | -- | 1.91 | 0.226 | 0.0381 | 19.3 | 59 | -- | -- |
| 73.13 | 0.401 | 5.94 | 0.525 | 0.311 | -0.645 | -- | -- | 0.129 | 0.606 | 15.45 | 49 | -- | -- |
| 74.51 | 0.404 | 5.89 | 0.859 | -- | -0.897 | -- | 1.7 | 0.259 | -- | 19.68 | 30 | -- | -- |
| 77.49 | 0.413 | 5.96 | 0.393 | 0.493 | -- | -0.0701 | -- | 0.0341 | 1.26 | -- | -- | -- | -- |
| 77.51 | 0.412 | 5.96 | 0.396 | 0.492 | -- | -- | -- | 0.0345 | 1.25 | -- | -- | -- | -- |
| 77.4 | 0.412 | 5.92 | 0.591 | -- | -0.892 | -- | -- | 0.18 | -- | 17.32 | 14 | -- | -- |
| 79.57 | 0.418 | 5.96 | -- | 0.375 | -0.359 | -- | -- | 0.0431 | 0.909 | 19.9 | 36 | -- | -- |
| 92.5 | 0.449 | 5.95 | 0.415 | -- | -- | -- | -- | 0.0446 | -- | -- | -- | -- | -- |
| 81.64 | 0.423 | 5.97 | -- | 0.499 | -- | -- | -- | -0.00962 | 1.28 | -- | -- | -- | -- |
| 85.71 | 0.433 | 5.94 | -- | -- | -0.672 | -- | -- | 0.0904 | -- | 21.25 | 24 | -- | -- |
| 97.04 | 0.46 | 5.96 | -- | -- | -- | -- | -- | -0.00149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.68 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 4 | 11 |
| 3 | 67.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 4 | 67.77 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 11 |
| 37 | 68.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 63 | 68.74 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 65 | 68.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 76 | 68.85 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 81 | 68.88 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 90 | 68.95 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 94 | 68.96 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 99 | 68.99 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 13 |
| 105 | 69.03 | atmosphere | 1005 | 30 | > th | dose dependent | sin | 3 | NA |
| 141 | 69.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 144 | 69.20 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 156 | 69.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 166 | 69.29 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 23 | 13 |
| 193 | 69.41 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 226 | 69.52 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 229 | 69.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 277 | 69.67 | temperature | 15 | 90 | > th | dose dependent | sin | 3 | NA |
| 294 | 69.71 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 23 |
| 310 | 69.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 360 | 69.90 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 362 | 69.90 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 369 | 69.91 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 387 | 69.94 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 6 | 22 |
| 388 | 69.94 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 410 | 69.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 416 | 69.99 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 9 | 4 |
| 456 | 70.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 17 |
| 463 | 70.09 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 488 | 70.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 614 | 70.40 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 656 | 70.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 660 | 70.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 662 | 70.49 | atmosphere | 1005 | 720 | > th | dose dependent | sin | 8 | NA |
| 683 | 70.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 14 |
| 685 | 70.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 17 |
| 697 | 70.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 20 |
| 745 | 70.59 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 7 | 12 |
| 750 | 70.59 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 803 | 70.68 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 21 |
| 811 | 70.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 863 | 70.75 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 904 | 70.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 916 | 70.80 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 955 | 70.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |