Os08g0110200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fertility restorer.
FiT-DB / Search/ Help/ Sample detail
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Os08g0110200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fertility restorer.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.53 | 0.459 | 11.9 | 1 | 0.0736 | 1.44 | -1.38 | 0.986 | 0.0308 | 20.6 | 24.8 | 886 | -- | -- |
| 96.66 | 0.458 | 11.9 | 1.18 | 0.0669 | 1.36 | -1.56 | -- | 0.0766 | 20.8 | 25 | 899 | -- | -- |
| 100.9 | 0.468 | 11.9 | 0.904 | 0.104 | 1.46 | -- | 1.69 | -0.00634 | 18.8 | 24.81 | 843 | -- | -- |
| 104.68 | 0.477 | 11.9 | 1.22 | 0.0777 | 1.31 | -- | -- | 0.0792 | 19.4 | 25.87 | 955 | -- | -- |
| 101.41 | 0.469 | 11.9 | 0.919 | -- | 1.47 | -- | 1.66 | -0.00321 | -- | 24.7 | 872 | -- | -- |
| 123.36 | 0.521 | 12 | 0.774 | 0.114 | -- | 1.45 | -- | -0.217 | 9.38 | -- | -- | -- | -- |
| 129.75 | 0.533 | 12 | 0.833 | 0.177 | -- | -- | -- | -0.211 | 13.2 | -- | -- | -- | -- |
| 104.92 | 0.477 | 11.9 | 1.21 | -- | 1.31 | -- | -- | 0.077 | -- | 25.9 | 1018 | -- | -- |
| 134.57 | 0.543 | 11.9 | -- | 0.475 | 0.976 | -- | -- | -0.156 | 13.8 | 31.02 | 120 | -- | -- |
| 131.68 | 0.536 | 12 | 0.826 | -- | -- | -- | -- | -0.214 | -- | -- | -- | -- | -- |
| 148.04 | 0.569 | 12 | -- | 0.163 | -- | -- | -- | -0.304 | 13 | -- | -- | -- | -- |
| 138.63 | 0.548 | 11.9 | -- | -- | 0.796 | -- | -- | -0.144 | -- | 25.6 | 915 | -- | -- |
| 149.69 | 0.571 | 12 | -- | -- | -- | -- | -- | -0.306 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.29 | temperature | 15.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 38 | 88.58 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 45 | 89.31 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 50 | 89.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 57 | 90.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 17 |
| 67 | 90.63 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 73 | 90.99 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 94 | 91.37 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 117 | 91.81 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 121 | 91.94 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 128 | 92.19 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 135 | 92.35 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 139 | 92.45 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 167 | 93.09 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 175 | 93.29 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 195 | 93.41 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 199 | 93.54 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 207 | 93.64 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 223 | 93.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 224 | 93.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 229 | 93.95 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 230 | 93.96 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 232 | 93.96 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 242 | 94.05 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 259 | 94.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 260 | 94.17 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 266 | 94.26 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 270 | 94.29 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 283 | 94.43 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 286 | 94.44 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 292 | 94.49 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 294 | 94.50 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 304 | 94.56 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 317 | 94.63 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 321 | 94.65 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 325 | 94.70 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 328 | 94.71 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 340 | 94.76 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 386 | 94.90 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 433 | 95.00 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 476 | 95.14 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 479 | 95.14 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 501 | 95.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 503 | 95.21 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 551 | 95.33 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 579 | 95.43 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 594 | 95.48 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 614 | 95.52 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 617 | 95.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 657 | 95.66 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 671 | 95.66 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 697 | 95.72 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 714 | 95.78 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 15 | NA |
| 715 | 95.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 722 | 95.79 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 15 | NA |
| 847 | 96.00 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 855 | 96.01 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 948 | 96.17 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 960 | 96.18 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 994 | 96.24 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 11 |