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Os02g0170000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0228) R2 : 0.906
β1 : -0.782 (0.0834) R2dD : 0.0189 R2D : 0.0159
β2 : 2.35 (0.0746) R2dC : 0.33 R2C : 0.654
β3 : -2.03 (0.0804) R2dE : 0.213 R2E : 0.544
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.294 (0.049) R2dN8 : 0.00995 R2N8 : 0.0147
σ : 0.425
deviance : 83.35
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C
peak time of C : 17.1
E
wheather : temperature
threshold : 19.2
memory length : 101
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.65
open length of G : 3.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.15 0.431 10.5 -0.882 2.46 -2 0.000263 -1.06 -0.292 17.1 19.2 88 3.9 3.38
85.14 0.43 10.5 -0.831 2.41 -2.02 0.182 -- -0.294 17.1 19.3 87 3.88 3.42
82.56 0.423 10.5 -0.799 2.39 -2.03 -- -0.988 -0.338 17.1 19.27 98 3.68 3.58
83.35 0.425 10.5 -0.782 2.35 -2.03 -- -- -0.294 17.1 19.2 101 3.65 3.6
207.27 0.671 10.5 -0.931 -- -3.23 -- -0.0399 -0.318 -- 4.849 167 2.5 5.18
194.06 0.653 10.5 -0.903 3.53 -- 0.537 -- -0.467 17.4 -- -- -- --
194.77 0.654 10.5 -0.904 3.53 -- -- -- -0.464 17.4 -- -- -- --
160.09 0.589 10.4 -0.708 -- -3.16 -- -- -0.286 -- 17.99 236 1.08 5.83
99.04 0.464 10.4 -- 2.35 -2.04 -- -- -0.216 17.1 19.16 104 3.55 3.58
845.52 1.36 10.5 -1.02 -- -- -- -- -0.552 -- -- -- -- --
216.33 0.688 10.5 -- 3.55 -- -- -- -0.364 17.4 -- -- -- --
171.21 0.609 10.4 -- -- -3.38 -- -- -0.148 -- 18.1 236 1.08 5.9
873.17 1.38 10.5 -- -- -- -- -- -0.438 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.14 temperature 15.0 90 > th dose dependent rect. 4 3
2 89.17 temperature 10.0 270 > th dose dependent rect. 2 4
5 90.94 temperature 20.0 90 > th dose independent rect. 4 3
7 91.76 humidity 60.0 270 > th dose dependent rect. 3 2
11 93.04 humidity 60.0 270 > th dose dependent rect. 2 4
12 93.24 precipitation 0.1 270 < th dose independent rect. 5 22
13 93.24 precipitation 0.1 270 < th dose dependent rect. 5 22
18 94.29 wind 9.0 270 < th dose independent rect. 5 22
20 94.70 precipitation 0.1 270 < th dose independent rect. 6 20
21 94.70 precipitation 0.1 270 < th dose dependent rect. 6 20
22 95.28 wind 9.0 90 < th dose independent rect. 7 21
23 95.64 radiation 1.0 270 < th dose independent rect. 3 2
25 95.66 radiation 10.0 270 < th dose dependent rect. 3 2
27 95.80 wind 9.0 90 < th dose dependent rect. 4 3
31 95.91 wind 9.0 270 < th dose independent rect. 3 2
32 95.91 temperature 10.0 270 > th dose independent rect. 3 2
34 95.91 temperature 30.0 270 < th dose independent rect. 3 2
35 95.91 humidity 50.0 270 > th dose independent rect. 3 2
38 95.91 atmosphere 995.0 270 > th dose independent rect. 3 2
39 95.91 atmosphere 1010.0 270 < th dose independent rect. 3 2
44 95.91 temperature 10.0 270 > th dose independent rect. 5 22
51 96.42 radiation 10.0 270 < th dose independent rect. 2 4
55 96.85 precipitation 0.1 270 < th dose independent rect. 3 2
56 96.85 precipitation 0.1 270 < th dose dependent rect. 3 2
72 97.28 temperature 10.0 90 > th dose independent rect. 7 21
76 97.39 radiation 10.0 270 < th dose dependent rect. 2 4
79 97.53 humidity 80.0 270 > th dose independent rect. 2 4
84 97.80 temperature 10.0 10 > th dose dependent rect. 8 20
85 97.83 wind 9.0 270 < th dose independent rect. 2 4
86 97.83 temperature 10.0 270 > th dose independent rect. 2 4
88 97.83 temperature 30.0 270 < th dose independent rect. 2 4
89 97.83 humidity 50.0 270 > th dose independent rect. 2 4
92 97.83 atmosphere 995.0 270 > th dose independent rect. 2 4
93 97.83 atmosphere 1015.0 270 < th dose independent rect. 2 4
98 97.87 wind 9.0 270 < th dose dependent rect. 2 4
100 98.03 precipitation 0.1 270 < th dose independent rect. 2 4
101 98.03 precipitation 0.1 270 < th dose dependent rect. 2 4
108 98.37 radiation 1.0 270 < th dose dependent rect. 2 17
116 98.84 radiation 1.0 270 < th dose dependent rect. 3 15
117 98.89 radiation 1.0 270 < th dose independent rect. 2 16
127 99.45 radiation 1.0 270 < th dose dependent rect. 3 9
134 99.56 radiation 1.0 270 < th dose independent rect. 2 9
156 100.36 humidity 60.0 270 > th dose dependent rect. 1 6
264 102.61 radiation 1.0 270 < th dose dependent sin 2 NA
327 103.75 precipitation 0.1 270 < th dose independent rect. 7 18
328 103.75 precipitation 0.1 270 < th dose dependent rect. 7 18
355 104.61 radiation 1.0 270 < th dose independent sin 2 NA
358 104.68 atmosphere 995.0 90 > th dose dependent rect. 4 3
371 104.99 radiation 40.0 270 < th dose dependent rect. 15 15
373 105.01 atmosphere 995.0 90 > th dose independent rect. 7 21
388 105.10 radiation 1.0 270 > th dose independent sin 2 NA
432 105.74 atmosphere 1010.0 270 < th dose independent rect. 1 6
456 106.36 wind 7.0 270 < th dose independent rect. 21 14
464 106.61 humidity 70.0 270 > th dose independent rect. 1 6
466 106.69 temperature 10.0 270 > th dose independent rect. 1 6
468 106.69 temperature 30.0 270 < th dose independent rect. 1 6
469 106.69 humidity 50.0 270 > th dose independent rect. 1 6
471 106.69 atmosphere 995.0 270 > th dose independent rect. 1 6
474 106.69 temperature 10.0 270 > th dose independent rect. 7 18
476 106.72 wind 9.0 270 < th dose independent rect. 1 6
481 106.90 precipitation 0.1 270 < th dose independent rect. 1 6
483 106.90 precipitation 0.1 270 < th dose dependent rect. 1 6
492 107.10 wind 1.0 270 > th dose independent rect. 6 20
631 109.48 atmosphere 995.0 270 > th dose dependent rect. 2 4
647 109.62 atmosphere 1015.0 90 < th dose independent rect. 7 21
648 109.62 humidity 80.0 90 > th dose dependent rect. 4 17
725 110.46 humidity 50.0 270 > th dose independent rect. 21 14
748 111.23 radiation 20.0 270 < th dose independent rect. 15 15
755 111.45 precipitation 0.1 270 < th dose independent rect. 21 14
756 111.45 precipitation 0.1 270 < th dose dependent rect. 21 14
757 111.47 temperature 10.0 270 > th dose independent rect. 11 10
758 111.47 temperature 10.0 270 > th dose independent rect. 21 14
759 111.47 atmosphere 995.0 270 > th dose independent rect. 21 14
769 111.80 wind 1.0 270 > th dose independent rect. 7 18
804 112.83 humidity 80.0 90 > th dose dependent rect. 4 15
869 114.08 atmosphere 1015.0 90 < th dose dependent rect. 4 3
909 114.56 humidity 80.0 90 > th dose dependent rect. 4 11
915 114.69 humidity 80.0 90 > th dose dependent rect. 4 13
925 114.83 atmosphere 1015.0 270 < th dose independent rect. 11 10
926 114.83 temperature 10.0 270 > th dose dependent rect. 6 7
955 115.43 wind 9.0 270 < th dose independent rect. 11 10
963 115.66 humidity 80.0 270 > th dose dependent rect. 1 18
971 115.82 wind 7.0 270 < th dose independent rect. 6 9