BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0150700 Os02g0150700|AK120070
(580 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0150700 Similar to RING finger protein 12 (LIM domain ... 1063 0.0
Os06g0695600 Zinc finger, RING-type domain containing protein 459 e-129
Os08g0241400 Zinc finger, RING-type domain containing protein 147 2e-35
Os01g0692700 Zinc finger, RING-type domain containing protein 137 3e-32
Os04g0648800 Zinc finger, RING-type domain containing protein 135 8e-32
Os04g0185500 Similar to Protein containing C-terminal RING-... 129 6e-30
Os01g0159300 Zinc finger, RING-type domain containing protein 124 1e-28
Os05g0163400 Zinc finger, RING-type domain containing protein 117 2e-26
Os05g0564300 Zinc finger, RING-type domain containing protein 116 5e-26
Os01g0667700 Zinc finger, RING-type domain containing protein 115 6e-26
Os04g0603200 Similar to C-terminal zinc-finger (Fragment) 84 3e-16
Os08g0548300 Zinc finger, RING-type domain containing protein 69 1e-11
Os03g0173900 Zinc finger, RING-type domain containing protein 68 2e-11
Os09g0535100 Zinc finger, RING-type domain containing protein 67 3e-11
Os09g0525400 Similar to RING finger protein 13 (C-RZF) 67 3e-11
Os04g0571200 Zinc finger, RING-type domain containing protein 66 6e-11
>Os02g0150700 Similar to RING finger protein 12 (LIM domain interacting RING
finger protein) (RING finger LIM domain-binding protein)
(R-LIM) (NY-REN-43 antigen)
Length = 580
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/580 (90%), Positives = 523/580 (90%)
Query: 1 MEDYPSGRSKAAIXXXXXXXXXXXXNQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERP 60
MEDYPSGRSKAAI NQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERP
Sbjct: 1 MEDYPSGRSKAAIGFLRRGGGFSSRNQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERP 60
Query: 61 RYLRDSFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNK 120
RYLRDSFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNK
Sbjct: 61 RYLRDSFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNK 120
Query: 121 RIVVDDRSSDVLHTETEGLATEQDQLIAPNAGVXXXXXXXXXXEHAVESLVRSAAPSSRT 180
RIVVDDRSSDVLHTETEGLATEQDQLIAPNAGV EHAVESLVRSAAPSSRT
Sbjct: 121 RIVVDDRSSDVLHTETEGLATEQDQLIAPNAGVSDSASSSDISEHAVESLVRSAAPSSRT 180
Query: 181 RRQKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQQHGHNNLDCTSVPNF 240
RRQKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQQHGHNNLDCTSVPNF
Sbjct: 181 RRQKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQQHGHNNLDCTSVPNF 240
Query: 241 LPSGCSSGSVYSRRFDAMRKXXXXXXXXXXXXXXXXTASLDDSPPAYPAIAGPRIRTTTT 300
LPSGCSSGSVYSRRFDAMRK TASLDDSPPAYPAIAGPRIRTTTT
Sbjct: 241 LPSGCSSGSVYSRRFDAMRKRTSDGGSFSRSRGLSGTASLDDSPPAYPAIAGPRIRTTTT 300
Query: 301 ERASQQNALRSRRNFQDSAVSVRTRRPPWGARFRISEEREDGMISQRDSSIGNQQSDQVH 360
ERASQQNALRSRRNFQDSAVSVRTRRPPWGARFRISEEREDGMISQRDSSIGNQQSDQVH
Sbjct: 301 ERASQQNALRSRRNFQDSAVSVRTRRPPWGARFRISEEREDGMISQRDSSIGNQQSDQVH 360
Query: 361 XXXXXXXXXXXXRPFSAELPHAIYSSRGEGSNAFTAXXXXXXXLYEERPPQTFHDLFRER 420
RPFSAELPHAIYSSRGEGSNAFTA LYEERPPQTFHDLFRER
Sbjct: 361 SSSEEASTESSSRPFSAELPHAIYSSRGEGSNAFTARRRRSSSLYEERPPQTFHDLFRER 420
Query: 421 NGRRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDNM 480
NGRRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDNM
Sbjct: 421 NGRRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDNM 480
Query: 481 SYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEYIEG 540
SYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEYIEG
Sbjct: 481 SYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEYIEG 540
Query: 541 EEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTVS 580
EEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTVS
Sbjct: 541 EEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTVS 580
>Os06g0695600 Zinc finger, RING-type domain containing protein
Length = 579
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 271/581 (46%), Positives = 345/581 (59%), Gaps = 18/581 (3%)
Query: 6 SGRSKAAIXXXXXXXXXXXXNQSTEERTIQNYDGPGITTRLNPMKTRLSDNQERPRYLRD 65
SGRS + +Q EER + T+LNPM R +D++E+PRYLR+
Sbjct: 5 SGRSISTTGFLRRGSSVSLKDQGNEERPNK--------TKLNPMNARWADSKEKPRYLRE 56
Query: 66 SFRSSTSMAIHGSSSKVPLRKFGDEKRRQTLLAGVDIAESSSRNAGGKHLEGSNKRIVVD 125
FRSS + A SSSK P+RK+ +EK+ +T L D AESSSR L+ S K +V +
Sbjct: 57 PFRSSGTKAACPSSSKAPVRKYFEEKQGRTFLGEADNAESSSRRTEANRLQCSKKAVVEE 116
Query: 126 DRSSDVLHTETEGL---ATEQDQLIAPNAGVXXXXXXXXXXEHAVESLVRSAAPSSRTRR 182
D E E L +T +DQ + + HA+ S+VR+AA S++R+
Sbjct: 117 DVHPYGQQDEPEDLLSTSTTEDQPAELDPELLDSSVSSGVSAHAIGSVVRNAALRSKSRQ 176
Query: 183 QKDKELNLGQSGVCSSSCTNRPTISRYAPADVKRPCNHASGVQQHGHNNLDCTSVPNFLP 242
QK KE +S+ NR TI R + VK GVQ+ NL CTS+ + LP
Sbjct: 177 QKGKEELCQIRPQTASAFVNRSTIPRNSTNGVKSSNAAGPGVQRRTLKNLGCTSISDVLP 236
Query: 243 SGCSSG-SVYSRRFDAMRKXXXXXXXXXXXXXXXXTASLDDSPPAYPAIAGPRIRTTTTE 301
SGCSS S++++R + MR +SL SP Y I GPR+RT E
Sbjct: 237 SGCSSANSIHNKRAEVMRNRAFDGESSSRPRGLNGHSSLGHSPAMYSGITGPRVRTA--E 294
Query: 302 RASQQNALRSRRNFQDSAVSVRTRRPP-WGARFRISEEREDGMISQRDSSIGNQQSDQVH 360
+++ Q S R+ Q+SA S R RRP AR R+ ERED + + R++ ++Q + H
Sbjct: 295 QSASQQTRTSSRSIQESADSSRIRRPSTQHARVRVPNEREDSVFALRETLARDRQPEWAH 354
Query: 361 XXXXXXXXXXXXRPFSAELPHAIYSSRGEGSNAFTAXXXXXXXLYEERPPQTFHDLFRER 420
RPFS ELPH IYSS +GS+ TA +E PPQ FH L ER
Sbjct: 355 FSLGEAAPRRSMRPFSMELPHEIYSSSRQGSSNQTARSRSSYR-PDESPPQMFHGLLVER 413
Query: 421 NGRRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDNM 480
R I++EGIAEVLLALDRIEQ+ ELTYEQL+VLETN+ L HDQH DMRMDIDNM
Sbjct: 414 ENYRRINMEGIAEVLLALDRIEQDDELTYEQLLVLETNLFLSGLGLHDQHRDMRMDIDNM 473
Query: 481 SYEELLALGDRIGSVSTALSEEQFVKCLRRSIY-IPVA-TKANAQVVDDIKCSICQEEYI 538
SYEELLAL +RIGSVSTALS+EQ VKCL+R++Y +P + +AN V+DD KCSICQEEYI
Sbjct: 474 SYEELLALEERIGSVSTALSDEQLVKCLKRNVYKLPNSDLEANRAVLDDAKCSICQEEYI 533
Query: 539 EGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPSTV 579
EGEEVGR+ CEHQYHV CIH+WLRQKNWCPICK SA PS +
Sbjct: 534 EGEEVGRMQCEHQYHVSCIHEWLRQKNWCPICKTSAIPSEM 574
>Os08g0241400 Zinc finger, RING-type domain containing protein
Length = 349
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%), Gaps = 2/107 (1%)
Query: 466 SHDQHSDMRMDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVV 525
S D+H MRMDID+MSYEELLALG+ IG+VST L E++ CL+R Y+P A+ ++
Sbjct: 238 SSDRHRGMRMDIDDMSYEELLALGETIGTVSTGLPEDELSNCLKRIHYVPSASTSHED-- 295
Query: 526 DDIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKA 572
DIKC ICQEEY+ EEV + C+H YH+ CI QWLRQKNWCPICK+
Sbjct: 296 GDIKCIICQEEYLPAEEVAEMACKHYYHLACIQQWLRQKNWCPICKS 342
>Os01g0692700 Zinc finger, RING-type domain containing protein
Length = 201
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 85/125 (68%)
Query: 450 EQLMVLETNILLGAFTSHDQHSDMRMDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLR 509
E++M+ +T +LLG + +D++ D R+D+DNM+YEELL LGD+IG V+T L E++ V+ LR
Sbjct: 74 EEIMMFQTRVLLGGMSMYDRYQDWRLDVDNMTYEELLELGDKIGYVNTGLREDEIVRNLR 133
Query: 510 RSIYIPVATKANAQVVDDIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPI 569
+ + + + KCSICQEE+ EE+GRL C H YHV CI QWL QKN CP+
Sbjct: 134 KVKHPAFDSSFRYSTEMEKKCSICQEEFEANEEMGRLDCGHSYHVYCIKQWLSQKNVCPV 193
Query: 570 CKASA 574
CK +
Sbjct: 194 CKTAV 198
>Os04g0648800 Zinc finger, RING-type domain containing protein
Length = 418
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 97/157 (61%), Gaps = 16/157 (10%)
Query: 418 RERNGRRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDI 477
R R GRR I I AL+ I + + +E +I G HD+H DMR+DI
Sbjct: 275 RSREGRRLIEIRN------ALEMIHRGENVRFE-------SIFYGGVDIHDRHRDMRLDI 321
Query: 478 DNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEY 537
DNMSYEELLAL +RIG+VST LSEE+ K L++ + +A+ V++ C ICQEEY
Sbjct: 322 DNMSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSSWRLEAS---VEEEPCCICQEEY 378
Query: 538 IEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASA 574
++G+++G L C H +HV C+ QWL KN CPICK +A
Sbjct: 379 VDGDDLGTLDCGHDFHVGCVRQWLVVKNTCPICKNTA 415
>Os04g0185500 Similar to Protein containing C-terminal RING-finger
Length = 709
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 74/107 (69%), Gaps = 2/107 (1%)
Query: 468 DQHSDMRMDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDD 527
D+H DMR+D+DNMSYEELLALG+RIG V+T LSE++ L++ Y+ + + V+
Sbjct: 602 DRHRDMRLDVDNMSYEELLALGERIGYVNTGLSEDKIRTGLKQWKYVSIPIEEPLTGVE- 660
Query: 528 IKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASA 574
C ICQEEY EGE++GRL C H +H CI QWL KN CPICK +
Sbjct: 661 -PCCICQEEYAEGEDMGRLDCGHDFHTACIKQWLVIKNLCPICKKTG 706
>Os01g0159300 Zinc finger, RING-type domain containing protein
Length = 501
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 2/132 (1%)
Query: 443 QEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDNMSYEELLALGDRIGSVSTALSEE 502
Q + +QL++++ L + + D H MR+DIDNMSYE+LLALG+ IG+V T L +E
Sbjct: 371 QPLMIDAQQLIMMQQFALRESREAQDPHRAMRLDIDNMSYEDLLALGESIGNVCTGLVDE 430
Query: 503 QFVKCLRRSIYIPVATKANAQVVDDIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLR 562
+ C+R IY + N Q DD KC+IC EEY + +G L C H +H C+ +WL+
Sbjct: 431 KISGCVREVIYCSSDEQQNDQ--DDGKCAICLEEYKDNSLLGILKCNHDFHTDCVKKWLK 488
Query: 563 QKNWCPICKASA 574
+KN CPICK++A
Sbjct: 489 EKNSCPICKSAA 500
>Os05g0163400 Zinc finger, RING-type domain containing protein
Length = 533
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 420 RNGRRHISIEGIAEVLLALDRIEQEAELTYEQLMVLETNILLGAFTSHDQHSDMRMDIDN 479
R+ R S G +++ + + + A E+ M+L+ ++ + + D H DMR+DID+
Sbjct: 379 RSRRMRDSYHGFHHLMIEDNNLGRSAA---ERFMMLDQLVIHESREAFDPHWDMRLDIDD 435
Query: 480 MSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDI---KCSICQEE 536
MSYEELLAL +RIG V+T L++E+ C+ + VA +++ + DD +C IC EE
Sbjct: 436 MSYEELLALEERIGHVNTGLADEKISGCV-----MEVACCSSSHLQDDQDNERCVICLEE 490
Query: 537 YIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASA 574
Y + +GRL C H +H CI +WL+ KN CP+CKA+A
Sbjct: 491 YKHEDTLGRLKCGHGFHCNCIKKWLQVKNTCPVCKAAA 528
>Os05g0564300 Zinc finger, RING-type domain containing protein
Length = 500
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 468 DQHSDMRMDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVA-TKANAQVVD 526
D+H DMR+D+D+M+YEEL+AL +RIG+V++ +E + L+ S Y+P A + V+
Sbjct: 385 DEHRDMRLDVDSMTYEELVALEERIGNVNSGFTESYIEENLKSSSYVPDADCMPDQSSVE 444
Query: 527 DIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPS 577
C ICQEEY E VG LGC H+YH CI WL KN CPICK +A P+
Sbjct: 445 KDACIICQEEYEAKELVGTLGCGHKYHAMCIKGWLMVKNLCPICKTTALPA 495
>Os01g0667700 Zinc finger, RING-type domain containing protein
Length = 523
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 468 DQHSDMRMDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIP----VATKANAQ 523
D+H DMR+DID+M+YEELLAL ++IG V+T L++ V+ L+ S+++P ++ K++
Sbjct: 405 DEHRDMRLDIDSMTYEELLALEEQIGDVNTGLAKSYIVEKLKTSLFVPGSSCMSNKSSES 464
Query: 524 VVDDIKCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASA 574
+++ C ICQEEY E +G L C H+YH CI QWL KN CPICK +A
Sbjct: 465 SMENDACIICQEEYQVKECIGTLDCGHRYHEDCIKQWLMVKNLCPICKTTA 515
>Os04g0603200 Similar to C-terminal zinc-finger (Fragment)
Length = 329
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 427 SIEGIAEVLLALDRIEQEAELT-----------YEQLMVLETNILLGAFTSHDQHSDMRM 475
S EG LA R + L+ Y + + + L F +D++ MRM
Sbjct: 207 STEGFISGFLARYRSNHQGLLSSLDDSIEDANGYWRFNMEGSEELENYFIFNDRYRGMRM 266
Query: 476 DIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQ 534
DID MSYEELLALGDRIG+VST LSE+ KCL RS+Y+ AT + + KCSICQ
Sbjct: 267 DIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYM--ATTSGTHEDCERKCSICQ 323
>Os08g0548300 Zinc finger, RING-type domain containing protein
Length = 305
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 475 MDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQ 534
+D D SYEEL+ALG+ +G+ S LS + SI K + + +C IC+
Sbjct: 203 VDPDEYSYEELVALGEVVGTESRGLSADTLASL--PSITYRAQDKQDGNME---QCVICR 257
Query: 535 EEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKA 572
E+ EGE + L C+H YH CI+QWL+ CP+C A
Sbjct: 258 VEFEEGESLVALPCKHSYHSECINQWLQLNKVCPMCSA 295
>Os03g0173900 Zinc finger, RING-type domain containing protein
Length = 250
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 475 MDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDIK----- 529
+D DNM+YEELL LG+ +G+ S LS+E R +PV TK K
Sbjct: 146 IDPDNMTYEELLDLGEAVGTQSRGLSQE-------RISLLPV-TKYKCGFFSRKKTRRER 197
Query: 530 CSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKA 572
C ICQ EY G L C+H YH C+ +WL CP+C A
Sbjct: 198 CVICQMEYRRGNLQMTLPCKHVYHASCVTRWLSINKVCPVCFA 240
>Os09g0535100 Zinc finger, RING-type domain containing protein
Length = 325
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 469 QHSDMRMDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKANAQVVDDI 528
Q + +D D SYEEL+ALG+ +G+ LS +P T V D
Sbjct: 217 QDAWQEVDPDEYSYEELVALGEAVGTGHRGLSAATLAS-------LPSVTYKAEGVQDGN 269
Query: 529 --KCSICQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPICKASAEPST 578
+C IC+ E+ +GE + L C+H YH CI+QWL+ CP+C SAE ST
Sbjct: 270 TEQCVICRVEFEDGESLIALPCKHSYHPECINQWLQINKVCPMC--SAEVST 319
>Os09g0525400 Similar to RING finger protein 13 (C-RZF)
Length = 174
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 475 MDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIYIPVATKAN--AQVVDDIKCSI 532
+D DNMSYE+L ALG+ +G+ S LS++ +P K + ++ +D +C I
Sbjct: 77 VDPDNMSYEQLQALGEAVGNQSRGLSDDLIC------YLVPFKNKCSFFSRKKNDEECVI 130
Query: 533 CQEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPIC 570
C+ Y +++ RL C H YH CI +WL+ CP+C
Sbjct: 131 CKSTYKSRQKLIRLPCSHCYHADCITRWLKINKACPVC 168
>Os04g0571200 Zinc finger, RING-type domain containing protein
Length = 290
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 475 MDIDNMSYEELLALGDRIGSVSTALSEEQFVKCLRRSIY-IPVATKANAQVVDDIKCSIC 533
+D DNM+YEEL LG+ IG+ S L E+ + L S Y I + ++ +C IC
Sbjct: 190 IDPDNMTYEELQQLGEAIGTESKGLPED-VIALLPTSTYKIRIFSRKEKH----DECVIC 244
Query: 534 QEEYIEGEEVGRLGCEHQYHVCCIHQWLRQKNWCPIC 570
Y + + +L CEHQYH C+ +WL+ CP+C
Sbjct: 245 CMTYKNRDRLTKLPCEHQYHQTCVTKWLKINKVCPVC 281
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,573,202
Number of extensions: 668456
Number of successful extensions: 2039
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 2050
Number of HSP's successfully gapped: 16
Length of query: 580
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 474
Effective length of database: 11,501,117
Effective search space: 5451529458
Effective search space used: 5451529458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)