Os04g0603200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to C-terminal zinc-finger (Fragment).
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Os04g0603200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to C-terminal zinc-finger (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.19 | 0.396 | 13.3 | 0.622 | 1.64 | 1.25 | 0.704 | -1.46 | 0.157 | 4.3 | 36.31 | 139 | -- | -- |
| 75.95 | 0.406 | 13.4 | 0.603 | 1.7 | 1.44 | -0.104 | -- | 0.139 | 4.06 | 60.15 | 150 | -- | -- |
| 72.09 | 0.395 | 13.3 | 0.611 | 1.65 | 1.26 | -- | -1.11 | 0.152 | 4.23 | 38.24 | 145 | -- | -- |
| 75.43 | 0.404 | 13.3 | 0.578 | 1.57 | 1.41 | -- | -- | 0.178 | 3.98 | 50 | 208 | -- | -- |
| 94.61 | 0.453 | 13.3 | 0.648 | -- | 2.24 | -- | -1.2 | 0.195 | -- | 14.1 | 365 | -- | -- |
| 100.05 | 0.469 | 13.4 | 0.571 | 2.41 | -- | -0.436 | -- | 0.0667 | 3.16 | -- | -- | -- | -- |
| 100.66 | 0.47 | 13.4 | 0.58 | 2.41 | -- | -- | -- | 0.0692 | 3.18 | -- | -- | -- | -- |
| 93.12 | 0.449 | 13.4 | 0.562 | -- | 2.32 | -- | -- | 0.186 | -- | 10 | 416 | -- | -- |
| 85.47 | 0.431 | 13.4 | -- | 1.63 | 1.37 | -- | -- | 0.086 | 3.9 | 82.37 | 203 | -- | -- |
| 429.82 | 0.969 | 13.4 | 0.682 | -- | -- | -- | -- | 0.132 | -- | -- | -- | -- | -- |
| 109.51 | 0.49 | 13.4 | -- | 2.42 | -- | -- | -- | 0.00462 | 3.18 | -- | -- | -- | -- |
| 101.38 | 0.469 | 13.4 | -- | -- | 2.34 | -- | -- | 0.129 | -- | 10 | 421 | -- | -- |
| 442.08 | 0.981 | 13.4 | -- | -- | -- | -- | -- | 0.0565 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.46 | radiation | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 6 | 70.52 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 9 | 70.73 | radiation | 30 | 90 | < th | dose dependent | rect. | 8 | 14 |
| 11 | 70.86 | radiation | 30 | 270 | < th | dose independent | rect. | 23 | 23 |
| 17 | 71.19 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 18 | 71.22 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 20 | 71.26 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 31 | 71.30 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 35 | 71.49 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 14 |
| 46 | 71.83 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 23 |
| 67 | 72.06 | radiation | 40 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 69 | 72.07 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 93 | 72.46 | radiation | 1 | 270 | > th | dose dependent | sin | 0 | NA |
| 129 | 72.90 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 135 | 73.01 | radiation | 20 | 90 | < th | dose independent | sin | 18 | NA |
| 141 | 73.08 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 173 | 73.25 | radiation | 1 | 90 | > th | dose dependent | sin | 19 | NA |
| 177 | 73.30 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 10 |
| 180 | 73.32 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 245 | 73.48 | radiation | 20 | 270 | < th | dose independent | sin | 22 | NA |
| 246 | 73.49 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 251 | 73.52 | radiation | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 375 | 74.10 | radiation | 20 | 270 | < th | dose independent | no | NA | NA |
| 546 | 74.63 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 20 |
| 630 | 75.02 | humidity | 90 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 766 | 75.63 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 842 | 75.92 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 11 |
| 847 | 75.94 | radiation | 30 | 90 | < th | dose independent | rect. | 17 | 18 |
| 972 | 76.05 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 984 | 76.09 | radiation | 30 | 270 | > th | dose independent | rect. | 9 | 6 |
| 989 | 76.12 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 10 |