BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0603200 Os04g0603200|AK100301
(329 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0603200 Similar to C-terminal zinc-finger (Fragment) 615 e-176
Os08g0241400 Zinc finger, RING-type domain containing protein 226 1e-59
Os02g0150700 Similar to RING finger protein 12 (LIM domain ... 85 7e-17
Os06g0695600 Zinc finger, RING-type domain containing protein 77 2e-14
Os01g0159300 Zinc finger, RING-type domain containing protein 67 2e-11
Os04g0648800 Zinc finger, RING-type domain containing protein 66 3e-11
Os01g0692700 Zinc finger, RING-type domain containing protein 65 1e-10
>Os04g0603200 Similar to C-terminal zinc-finger (Fragment)
Length = 329
Score = 615 bits (1585), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/329 (92%), Positives = 304/329 (92%)
Query: 1 MDDHMGRRTVGGLLFTKGGSILLFREDSARHKATNCCTRHGCSSKHLAGKDKQTHRAATA 60
MDDHMGRRTVGGLLFTKGGSILLFREDSARHKATNCCTRHGCSSKHLAGKDKQTHRAATA
Sbjct: 1 MDDHMGRRTVGGLLFTKGGSILLFREDSARHKATNCCTRHGCSSKHLAGKDKQTHRAATA 60
Query: 61 AKEASETPRRSQIFRKPSTRTPQGSTATDNISRNAASSYSENDNRPRETPGRDLIARLKE 120
AKEASETPRRSQIFRKPSTRTPQGSTATDNISRNAASSYSENDNRPRETPGRDLIARLKE
Sbjct: 61 AKEASETPRRSQIFRKPSTRTPQGSTATDNISRNAASSYSENDNRPRETPGRDLIARLKE 120
Query: 121 RVNASRKRSLNRENXXXXXXXXXXXXXXXXXXXXXXXXXAASRIRKADEGANAGAVNVRR 180
RVNASRKRSLNREN AASRIRKADEGANAGAVNVRR
Sbjct: 121 RVNASRKRSLNRENSPSSPNGLSATSSSSSRTVSRPSHRAASRIRKADEGANAGAVNVRR 180
Query: 181 DSSGDTRRNSDRDVDDFLLVEQAARDSTEGFISGFLARYRSNHQGLLSSLDDSIEDANGY 240
DSSGDTRRNSDRDVDDFLLVEQAARDSTEGFISGFLARYRSNHQGLLSSLDDSIEDANGY
Sbjct: 181 DSSGDTRRNSDRDVDDFLLVEQAARDSTEGFISGFLARYRSNHQGLLSSLDDSIEDANGY 240
Query: 241 WRFNMEGSEELENYFIFNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLD 300
WRFNMEGSEELENYFIFNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLD
Sbjct: 241 WRFNMEGSEELENYFIFNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLD 300
Query: 301 RSMYMATTSGTHEDCERKCSICQARIFRW 329
RSMYMATTSGTHEDCERKCSICQARIFRW
Sbjct: 301 RSMYMATTSGTHEDCERKCSICQARIFRW 329
>Os08g0241400 Zinc finger, RING-type domain containing protein
Length = 349
Score = 226 bits (577), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/321 (46%), Positives = 187/321 (58%), Gaps = 19/321 (5%)
Query: 5 MGRRTVGGLLFTKGGSILLFREDSARHKATNCCTRHGCSSKHLAGKDKQTHRAATAAKEA 64
MGRRTVGGLL TKGGSIL++REDS RHKAT CCTR GCSSK K+K+ R KEA
Sbjct: 1 MGRRTVGGLLLTKGGSILVYREDSPRHKATACCTRTGCSSKLFRDKEKKMRRPT---KEA 57
Query: 65 SETPRRSQIFRKPSTRTPQGSTATDNISRNAASSYSENDNRPR-ETPGRDLIARLKERVN 123
P+RS + + PQG A + RNAA + SE NRPR ET G+DL+ LKERVN
Sbjct: 58 V-IPQRSLLVSGSNRLLPQGRMAYGS-RRNAAGTCSETGNRPRRETAGQDLLDHLKERVN 115
Query: 124 ASRKRSLNRENXXXXXXXXXXXXXXXXXXXXXXXXXAASRIRKADEGANAGAVNVRRDSS 183
+SRKRSL+ + + + D G N +R DS
Sbjct: 116 SSRKRSLSGGSSPSSSNTSSAGSLSSSSRSISRQLHRSVPKTRKDGGTNGSNARMRSDSG 175
Query: 184 GDTRRNSDRDVDDFLLVEQAARDSTEGFISGFLARYRS-NHQGLLSSLDDSIEDANGYWR 242
G++ N R D + T F+S L R+RS N + +S L++S+ D+ YWR
Sbjct: 176 GNSGANVHRRAD--------LQGPTGRFVSQSLLRHRSRNQEEPVSHLENSLNDSTEYWR 227
Query: 243 FNMEGSEELENYFIFNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRS 302
F ++ S+E + +DR+RGMRMDID MSYEELLALG+ IGTVSTGL ED LS CL R
Sbjct: 228 FGVDESDEDAS----SDRHRGMRMDIDDMSYEELLALGETIGTVSTGLPEDELSNCLKRI 283
Query: 303 MYMATTSGTHEDCERKCSICQ 323
Y+ + S +HED + KC ICQ
Sbjct: 284 HYVPSASTSHEDGDIKCIICQ 304
>Os02g0150700 Similar to RING finger protein 12 (LIM domain interacting RING
finger protein) (RING finger LIM domain-binding protein)
(R-LIM) (NY-REN-43 antigen)
Length = 580
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 169 EGANAGAVNVRRDSSGDTRRNSDRDVDDFLLVEQAARDSTEGFISGFLARYRSNHQGLLS 228
EG+NA RR SS R D F S EG LA R + L+
Sbjct: 389 EGSNAFTARRRRSSSLYEERPPQTFHDLFRERNGRRHISIEGIAEVLLALDRIEQEAELT 448
Query: 229 SLDDSIEDANGYWRFNMEGSEELENYFIFNDRYRGMRMDIDGMSYEELLALGDRIGTVST 288
Y + + + L F +D++ MRMDID MSYEELLALGDRIG+VST
Sbjct: 449 -----------YEQLMVLETNILLGAFTSHDQHSDMRMDIDNMSYEELLALGDRIGSVST 497
Query: 289 GLSEDALSKCLDRSMYM--ATTSGTHEDCERKCSICQ 323
LSE+ KCL RS+Y+ AT + + KCSICQ
Sbjct: 498 ALSEEQFVKCLRRSIYIPVATKANAQVVDDIKCSICQ 534
>Os06g0695600 Zinc finger, RING-type domain containing protein
Length = 579
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 30/114 (26%)
Query: 240 YWRFNMEGSEEL----------------------ENYFI----FNDRYRGMRMDIDGMSY 273
Y R NMEG E+ N F+ +D++R MRMDID MSY
Sbjct: 416 YRRINMEGIAEVLLALDRIEQDDELTYEQLLVLETNLFLSGLGLHDQHRDMRMDIDNMSY 475
Query: 274 EELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSGTHED----CERKCSICQ 323
EELLAL +RIG+VST LS++ L KCL R++Y S + + KCSICQ
Sbjct: 476 EELLALEERIGSVSTALSDEQLVKCLKRNVYKLPNSDLEANRAVLDDAKCSICQ 529
>Os01g0159300 Zinc finger, RING-type domain containing protein
Length = 501
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 259 DRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSGTHEDCERK 318
D +R MR+DID MSYE+LLALG+ IG V TGL ++ +S C+ +Y ++ ++ + K
Sbjct: 396 DPHRAMRLDIDNMSYEDLLALGESIGNVCTGLVDEKISGCVREVIYCSSDEQQNDQDDGK 455
Query: 319 CSIC 322
C+IC
Sbjct: 456 CAIC 459
>Os04g0648800 Zinc finger, RING-type domain containing protein
Length = 418
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 257 FNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSGTHEDCE 316
+DR+R MR+DID MSYEELLAL +RIG VSTGLSE+ ++K L + + + + E
Sbjct: 310 IHDRHRDMRLDIDNMSYEELLALEERIGNVSTGLSEEEVTKLLKQRKFSSWRLEASVE-E 368
Query: 317 RKCSICQ 323
C ICQ
Sbjct: 369 EPCCICQ 375
>Os01g0692700 Zinc finger, RING-type domain containing protein
Length = 201
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 259 DRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSG--THEDCE 316
DRY+ R+D+D M+YEELL LGD+IG V+TGL ED + + L + + A S + E
Sbjct: 92 DRYQDWRLDVDNMTYEELLELGDKIGYVNTGLREDEIVRNLRKVKHPAFDSSFRYSTEME 151
Query: 317 RKCSICQ 323
+KCSICQ
Sbjct: 152 KKCSICQ 158
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,063,837
Number of extensions: 391814
Number of successful extensions: 1356
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 7
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)