BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0603200 Os04g0603200|AK100301
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G10650.1 | chr5:3365237-3367263 REVERSE LENGTH=526 85 6e-17
AT4G34040.1 | chr4:16304638-16307503 REVERSE LENGTH=667 82 3e-16
AT4G31450.1 | chr4:15255955-15257977 REVERSE LENGTH=498 80 1e-15
AT2G37150.3 | chr2:15603748-15607600 REVERSE LENGTH=600 75 3e-14
AT5G24870.1 | chr5:8545008-8546923 REVERSE LENGTH=521 75 6e-14
AT2G15530.4 | chr2:6774150-6777899 FORWARD LENGTH=781 74 9e-14
AT1G17970.1 | chr1:6185032-6187202 FORWARD LENGTH=369 71 8e-13
AT1G45180.1 | chr1:17099335-17101683 FORWARD LENGTH=646 68 6e-12
AT5G42940.1 | chr5:17216649-17219171 REVERSE LENGTH=692 67 1e-11
AT3G15070.1 | chr3:5070472-5072344 REVERSE LENGTH=487 64 1e-10
AT1G73760.1 | chr1:27739366-27741161 REVERSE LENGTH=368 62 3e-10
AT1G53190.1 | chr1:19838072-19840003 FORWARD LENGTH=495 58 6e-09
>AT5G10650.1 | chr5:3365237-3367263 REVERSE LENGTH=526
Length = 525
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 4/73 (5%)
Query: 255 FIFNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMAT----TSG 310
F F D++R MR+DID MSYEELLALGD++GTVST LSE+ALS+ L +S+Y T +
Sbjct: 407 FRFYDQHRDMRLDIDNMSYEELLALGDKMGTVSTALSEEALSRSLKQSIYQETDETGSIS 466
Query: 311 THEDCERKCSICQ 323
++D + KCSICQ
Sbjct: 467 LYKDDDIKCSICQ 479
>AT4G34040.1 | chr4:16304638-16307503 REVERSE LENGTH=667
Length = 666
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 12/84 (14%)
Query: 251 LENYFIF-----------NDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCL 299
E+Y +F +DR+R MR+D+D MSYEELLALG+RIG VSTGLSE+ + K +
Sbjct: 541 FEDYMVFDPLIYQGMAEMHDRHRDMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKVM 600
Query: 300 DRSMYMATTSGTHEDCERKCSICQ 323
+ + ++ +G+H+D E C +CQ
Sbjct: 601 KQHKHTSSAAGSHQDME-PCCVCQ 623
>AT4G31450.1 | chr4:15255955-15257977 REVERSE LENGTH=498
Length = 497
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 8/75 (10%)
Query: 257 FNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYM--------ATT 308
F+D++R MR+DID MSYEELLAL +RIGTVST L+E+A+SKCL S+Y T
Sbjct: 378 FHDQHRDMRLDIDNMSYEELLALEERIGTVSTALTEEAISKCLKTSIYQMKPLSYGSITK 437
Query: 309 SGTHEDCERKCSICQ 323
S + + KCSICQ
Sbjct: 438 SPSDNKEDAKCSICQ 452
>AT2G37150.3 | chr2:15603748-15607600 REVERSE LENGTH=600
Length = 599
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 3/64 (4%)
Query: 259 DRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSGTHEDCERK 318
D +R MR+DID MSYEELL LG+RIG+V+TGLS+ A+S CL +MY + + +RK
Sbjct: 488 DHHRDMRLDIDNMSYEELLDLGERIGSVNTGLSDSAISSCLLATMYYPSYQ---TEEQRK 544
Query: 319 CSIC 322
C+IC
Sbjct: 545 CAIC 548
>AT5G24870.1 | chr5:8545008-8546923 REVERSE LENGTH=521
Length = 520
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 9/80 (11%)
Query: 253 NYFI-----FNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMAT 307
N F+ F+D++R MR+DID MSYEELLAL +++GTVST LSE+AL K L S+Y
Sbjct: 393 NLFLNGMSSFHDQHRDMRLDIDNMSYEELLALEEKMGTVSTALSEEALLKSLKSSIYRPN 452
Query: 308 TSG----THEDCERKCSICQ 323
++D + KCSICQ
Sbjct: 453 DESDDICLNKDDDVKCSICQ 472
>AT2G15530.4 | chr2:6774150-6777899 FORWARD LENGTH=781
Length = 780
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 15/87 (17%)
Query: 251 LENYFIF-----------NDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCL 299
+E+Y +F +DR+R MR+D+D MSYEELLALG+RIG VSTGLSE+ + K +
Sbjct: 575 VEDYMVFDPLIYQGMTDMHDRHREMRLDVDNMSYEELLALGERIGDVSTGLSEEVILKAM 634
Query: 300 DRSMYMATTSGT---HEDCERKCSICQ 323
+ + +++ + H++ E C ICQ
Sbjct: 635 KQHKHTSSSPSSVELHQNIE-PCCICQ 660
>AT1G17970.1 | chr1:6185032-6187202 FORWARD LENGTH=369
Length = 368
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 10/79 (12%)
Query: 251 LENYFIFN------DRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMY 304
L+N F+ D Y +R+D+D MSYE+LL LGDRIG V+TGL E + +CL +
Sbjct: 250 LQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLKESEIHRCLGK--- 306
Query: 305 MATTSGTHEDCERKCSICQ 323
S +H +RKCSICQ
Sbjct: 307 -IKPSVSHTLVDRKCSICQ 324
>AT1G45180.1 | chr1:17099335-17101683 FORWARD LENGTH=646
Length = 645
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 257 FNDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSGTHEDCE 316
+DRYR MR+D+D M+YEELL+L +RIG V TGL+E+ +S L + Y ++T + E
Sbjct: 532 IHDRYRDMRLDVDNMTYEELLSLEERIGDVCTGLNEETISNRLKQQKYKSSTRSSQE--V 589
Query: 317 RKCSICQ 323
C +CQ
Sbjct: 590 EPCCVCQ 596
>AT5G42940.1 | chr5:17216649-17219171 REVERSE LENGTH=692
Length = 691
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 258 NDRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMYMATTSGTHEDCER 317
+DRYR MR+D+D MSYEELLAL +RIG V TG++E+ +S L + Y + T + +D E
Sbjct: 578 HDRYRDMRLDVDNMSYEELLALEERIGDVCTGVNEETISNRLKQRKYKSNTK-SPQDAE- 635
Query: 318 KCSICQ 323
C +CQ
Sbjct: 636 PCCVCQ 641
>AT3G15070.1 | chr3:5070472-5072344 REVERSE LENGTH=487
Length = 486
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 209 EGFISGFLARYRSNHQGLLSSLDDSIEDANGYWRFNMEGSEELENYFIFNDRYRGMRMDI 268
E F+ + R+R L + N +W + N + D ++ MR+DI
Sbjct: 325 EDFVPAAILRHRE-----LPHFRAMPANENAFWEVG-----DFYNAVNYVDHHQDMRLDI 374
Query: 269 DGMSYEELLALGDRIGTVSTGLSEDALSKCLDR--SMYMATTSGTHEDCER-KCSICQ 323
+ MSYEELLAL D+IGTV TGLS + + + L R S + G D E C+ICQ
Sbjct: 375 EDMSYEELLALSDQIGTVKTGLSSEDVKELLKRRTSTRINLEEGPSTDLETDSCTICQ 432
>AT1G73760.1 | chr1:27739366-27741161 REVERSE LENGTH=368
Length = 367
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 9/79 (11%)
Query: 251 LENYFIFN------DRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSKCLDRSMY 304
++N F+ D++R MR+++D M+YE+LL LG+RIG V+TGL+E + CL R +
Sbjct: 248 MQNGFVMGGVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQIKSCL-RKVK 306
Query: 305 MATTSGTHEDCERKCSICQ 323
T D RKC ICQ
Sbjct: 307 PCRQDTTVAD--RKCIICQ 323
>AT1G53190.1 | chr1:19838072-19840003 FORWARD LENGTH=495
Length = 494
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 259 DRYRGMRMDIDGMSYEELLALGDRIGTVSTGLSEDALSK------CLDRSMYMATTSGTH 312
D +R MR+DI+ MSYEELLAL +RIGTV+TGL E+ + C + ++S
Sbjct: 375 DHHRDMRLDIEEMSYEELLALSERIGTVNTGLPEEDVKNHLKTRTCSGINFEKESSSPRT 434
Query: 313 EDCE-RKCSICQ 323
+D E C+ICQ
Sbjct: 435 KDLETEPCTICQ 446
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,320,642
Number of extensions: 242795
Number of successful extensions: 774
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 12
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)